Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03491 ATGTTAGGGACAGAGTTTTGTGGTAAAGTAATCAAAAGAACAAAGAGTTTGGGACTAAATGAGTACAAGTTTCTCCTTAAAGCTATTGTAAGTTCCGGAATAGGCGAACAAACTTATGCACCAAAAAACGTCTTTGAAGGCCGCGAAGAATCACCAACACTGAACAACGGGATCATAGAAATGCAAGAGTTTTTCGACGACAGCATTGCAAAACTCCTCGCAAGGTCAGCTATTTCCCCTTCCGAAATCGATGTTCTTGTTGTCAACGTCGCAATGTTCGCACCTCTTCCTTCTCTATCGTCGCACATCATTAACCGTTACAAAATGAGACACGACATAAAAGTGTACAATCTCACCGGAATGGGATGTAGTGCTACCCTTATATCATTAGACATTATTCAAAACATTTtcaaatcacaaaaaaacaaattagcaCTTTTGGTCACATCAGAGTGTCTTAGTCCAAATTGGTATACAGGCAATGATAGATCAATGATCTTAGCCAACTGTCTTTTCCGTACCGGTGGTTGCGCAATTCTTTTGACAAACAAAAGATCTTTAAAGAATAATAGTATACTAAAATTGAAGTGTTTAGTCAGAACACACCACGGCGCGCGCGAAGACTCGTACAATTGTGTCCACCAAATGGAAGATGGCCAGGGTAGGCTTGGTGTTCATTTAGGGGAAAATCTCCCAAAAGCAGCAACAAGAGCTTTTGTTGACAATTTAACGGTACTTTCACCCAAAATTTTGCCAACAAGCGAATTACTTAGGTTTCTTCTTGTTTTACTTTTCAAGAAACTTAAGATATTTAGTTCAACTTCTAAGTCTAGTGATGGAAcagtaacaaaaaaatcacCATTAAATTTCAAAACTGGTGTAGATCATTTTTGTATCCATACAGGAGGAAAAGCAGTGATAGATGGAATTGGAATGAGTTTAGATCTATCTGAATACGATCTCGAGCCAGCAAGAATGACGCTTCATCGTTTCGGCAACACTTCAGCAAGTAGTTTGTGGTATGTGTTAGGATACTTGGAAGCAAAAAAGAGGCTAAAAAAAGGTGATAGAGTTTTTATGATAAGTTTTGGTGCTGGACTTAAATGCAATAGTTGTTTATGGGAAGTGATGAAAGATGTTAATGGAGATGGAAATGTTTGGGAAGATTGTATTGATGATTATCCACCTGAATCTTTGGCCAATGTTTTCATGGAGAAGTATGGTTGGGTCAATGAAGTTGAACATCATGACAACTTAGAATATCCTGATTTTCTTAAGTGA 1281 0.3692 MLGTEFCGKVIKRTKSLGLNEYKFLLKAIVSSGIGEQTYAPKNVFEGREESPTLNNGIIEMQEFFDDSIAKLLARSAISPSEIDVLVVNVAMFAPLPSLSSHIINRYKMRHDIKVYNLTGMGCSATLISLDIIQNIFKSQKNKLALLVTSECLSPNWYTGNDRSMILANCLFRTGGCAILLTNKRSLKNNSILKLKCLVRTHHGAREDSYNCVHQMEDGQGRLGVHLGENLPKAATRAFVDNLTVLSPKILPTSELLRFLLVLLFKKLKIFSSTSKSSDGTVTKKSPLNFKTGVDHFCIHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLGYLEAKKRLKKGDRVFMISFGAGLKCNSCLWEVMKDVNGDGNVWEDCIDDYPPESLANVFMEKYGWVNEVEHHDNLEYPDFLK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03491 426 CDD CHS_like 11 374 - -
Tsu02g03491 426 PANTHER 3-KETOACYL-COA SYNTHASE 1 416 - -
Tsu02g03491 426 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 409 IPR012392 GO:0006633|GO:0016020|GO:0016747
Tsu02g03491 426 Gene3D - 23 376 IPR016039 GO:0016746
Tsu02g03491 426 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 294 375 IPR013747 -
Tsu02g03491 426 PANTHER 3-KETOACYL-COA SYNTHASE 1 416 IPR012392 GO:0006633|GO:0016020|GO:0016747
Tsu02g03491 426 SUPERFAMILY Thiolase-like 23 377 IPR016039 GO:0016746
Tsu02g03491 426 Pfam FAE1/Type III polyketide synthase-like protein 4 268 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03491 Tsu-Chr2 39100254 39101534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03491 1 423 Acyl Lipid Metabolism Gene Families AT2G28630 69.535 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03491 K15397 - gmx:100809149 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03491 02 39100254 39101534 Tsu02g03491 02 39100254 39101534 ECH
Tsu02g05149 02 60547851 60549312 Tsu02g03491 02 39100254 39101534 ECH
Tsu02g05149 02 60547851 60549312 Tsu02g03491 02 39100254 39101534 PCT