Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01597 ATGGCGAGTAGACAACGAATATGTAACCAATGTGGAACACTACTAGTGGTTCCACCAGAAATCCAATCCTTTAAGTGTTCAATATGCAATGGCATCACACATGTTCAATCCATAGGTCCAATGAATCAAGCCTACAACTCTCTTAATCATATTGCAGGTCTTTTTAGAGGCTTCATGAACACTATAACAACTAGTTCAGTAATTAACAGCAATTCAGGTAATTATGGGACACCTCAGTTTGGATATTATCTTCAGCCTCAGCCTTTAAGGCCTTCATACCCCTTGATTCCTCCTTCTCCATATGGCTCAAAAAGGGCAGTTTTGTGTGGAATTTGCTACCATGGGAAGAGTTATAGGCTTAAGGGCTCTATCAATGATGTAAAGTGTATGAATTACTTTCTGATTAAGGAGTTTGGGTTTCCAAGTGACTCCATTCTCATGCTCACAGATGATAAGGAGGAAAGAAATCCACTAAAAATACCGACGaaatataacattcaaatgGCTTTAAGGTGGCTGATTGAGGGTAGCAAATCAGGGGACTCATTAGTGTTTCATTACTCAGGACATGGCACACAGGAAATGAACATGAATGAGATTGATCATAGGTATGATAATGCAATTTGTCCTGTTGATTATGAGCAGAAAGGAAAGATACTGAATGATGAGATCAATGCAACAATTGTTAGACCACTACCATTTGGTTCTAAACTTCATGCTATTATTGATGCATGTCATAGTGGGAATGTTCTTGATTTATCATTTGTGTGCAAGATGAACAGGGAAGGGCATTACACATGGGAGGATCATACAAGTTCAAGAACTTATAAAGGCACAAAAGGAGGAGTAGCAATTTGTATTTCAGCTTGTGATGATGATCAAGTCTCTGTAGACACATCTGCTTTAAGTGGCAAAGAAGTTACAGGTGCATTGACTTACAGTTTCATCCAAACAGTGCAAAATGAACCAGGATTGACTTATGGTAACTTGCTTAGTACCATGCGTGCTGCCACGCATGGTACTAAAACAGGCATAGTTACTCTAAATGGTCCAATTGCTTCACTCTTAAATAAACTTCTTGGCCTACGCATCAAACAGGAGGCACAAATATCATCCTCAGAGTTGTTTGACATGTATAAAAAGCAGTTTATACTATGA 1158 0.3834 MASRQRICNQCGTLLVVPPEIQSFKCSICNGITHVQSIGPMNQAYNSLNHIAGLFRGFMNTITTSSVINSNSGNYGTPQFGYYLQPQPLRPSYPLIPPSPYGSKRAVLCGICYHGKSYRLKGSINDVKCMNYFLIKEFGFPSDSILMLTDDKEERNPLKIPTKYNIQMALRWLIEGSKSGDSLVFHYSGHGTQEMNMNEIDHRYDNAICPVDYEQKGKILNDEINATIVRPLPFGSKLHAIIDACHSGNVLDLSFVCKMNREGHYTWEDHTSSRTYKGTKGGVAICISACDDDQVSVDTSALSGKEVTGALTYSFIQTVQNEPGLTYGNLLSTMRAATHGTKTGIVTLNGPIASLLNKLLGLRIKQEAQISSSELFDMYKKQFIL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01597 385 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 7 35 IPR005735 -
Tsu02g01597 385 PANTHER METACASPASE-4 5 383 - -
Tsu02g01597 385 Pfam Caspase domain 104 377 - -
Tsu02g01597 385 Pfam LSD1 zinc finger 8 31 IPR005735 -
Tsu02g01597 385 SUPERFAMILY Caspase-like 89 254 IPR029030 -
Tsu02g01597 385 Gene3D - 74 385 - -
Tsu02g01597 385 PANTHER ICE-LIKE PROTEASE (CASPASE) P20 DOMAIN PROTEIN 5 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01597 Tsu-Chr2 14024142 14026140 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01597 K22684 - gmx:100783197 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01597 02 14024142 14026140 Tsu02g01597 02 14024142 14026140 ECH
Tsu02g01597 02 14024142 14026140 Tsu08g04311 08 61059358 61060101 PCT