Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01206 ATGTCAACTTTTTCGAAAGGTGATCATAGTATGAGGTCCGAGGCTGTGGAtagtgttgatgatgatgatgactcCGTTCTTCCTGGACTCACTGATGATGTTTCAAAGTATTGCCTTGCGCTTGTGCCACGTTCTAACTTCCTAGCTATGGGTGGCGTGTGCAAGAGATGGAGGCGTTTCATTCAAAGCAAAGAATTCATAACCGTGAGAAAATTGGCCGGGCAACTTGAGGAATGGCTCTATATCTTAACAGCTGATAGTGAAGGAAAAGGAAGTCATTGGGAGGTTATGGATTCTTTTGGTCATAATCGCCGATCTCTTCCACCAATGCCTGGTCCAGGGAAGGCTGAGTTTGGTGTTGTGGTTCTTAACGGAAAGCTTCTTGTTATGGCTGGCTATTCATCCATTGATGGAACTGTTTCTGTTTCAGCAGAGGTTTACCAATATAATTCTAACCTCGACAGCTGGATCAGATTGTCGAACATGAATGTGGCTAGGTACGACTTTGCTTGTGCAGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGATATGGACCAGAAGGTGATAGTCTCTCAAGCGCCGAGGTCTATGATCCCGATACTGACAAGTGGACAGTGATTGAGAGCCTGCGTCGTCCAAGATGGGGTTGCTTTGCTTGTGGATTTGAGGGTAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTTACAATCGGAAATTCTAAGTTTGTTGATGTTTATGACCCTGAGAAGCATACGTGGCGTGAGATGAAAAATGGGTGTGTCATGGTCACTGCACAGGCGGTACTagaaaataagttattttgtaTGGAGTGGAAGAATCAACGGAAGTTGTCGATATTTAATCCAGATGATAATTCATGGAAAATGGTACCGGTACCTCTGACCGGGAGTTCAAGTGTAGGTTTTAGATTTGGGATACTGAATGGTAAGCTTTTGCTGTTTTCATTGGAGGAAGATCCTACATATAGGACTTTATTGTATGATCCAAATGCAGCGCCGGGGTGTGAGTGGGGGACTACTGATATAAAACCATCTGGTTTGTGCTTGTGCAGTGTTACTATCAAGACCTGA 1092 0.4304 MSTFSKGDHSMRSEAVDSVDDDDDSVLPGLTDDVSKYCLALVPRSNFLAMGGVCKRWRRFIQSKEFITVRKLAGQLEEWLYILTADSEGKGSHWEVMDSFGHNRRSLPPMPGPGKAEFGVVVLNGKLLVMAGYSSIDGTVSVSAEVYQYNSNLDSWIRLSNMNVARYDFACAEVNGLVYAVGGYGPEGDSLSSAEVYDPDTDKWTVIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDVYDPEKHTWREMKNGCVMVTAQAVLENKLFCMEWKNQRKLSIFNPDDNSWKMVPVPLTGSSSVGFRFGILNGKLLLFSLEEDPTYRTLLYDPNAAPGCEWGTTDIKPSGLCLCSVTIKT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01206 363 Gene3D - 63 359 IPR015915 GO:0005515
Tsu02g01206 363 Pfam F-box domain 30 66 IPR001810 GO:0005515
Tsu02g01206 363 SMART kelc_smart 126 176 IPR006652 GO:0005515
Tsu02g01206 363 SMART kelc_smart 225 273 IPR006652 GO:0005515
Tsu02g01206 363 SMART kelc_smart 177 224 IPR006652 GO:0005515
Tsu02g01206 363 PANTHER KELCH REPEAT F-BOX PROTEIN 3 362 - -
Tsu02g01206 363 SUPERFAMILY F-box domain 27 67 IPR036047 GO:0005515
Tsu02g01206 363 SUPERFAMILY Kelch motif 77 324 IPR015915 GO:0005515
Tsu02g01206 363 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g01206 363 Pfam Kelch motif 217 257 IPR006652 GO:0005515
Tsu02g01206 363 Pfam Kelch motif 165 210 IPR006652 GO:0005515
Tsu02g01206 363 Pfam Kelch motif 116 163 IPR006652 GO:0005515
Tsu02g01206 363 PANTHER OS02G0202900 PROTEIN 3 362 IPR045887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01206 Tsu-Chr2 10162431 10163628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01206 30 208 Miscellaneous Gene Families AT4G33900 28.205 3.07e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01206 - - gmx:100815474 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01206 02 10162431 10163628 Tsu02g01206 02 10162431 10163628 ECH
Tsu07g02723 07 31857634 31859096 Tsu02g01206 02 10162431 10163628 PCT