Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00770 ATGTCATCATCGACATGTCCGATCGGTAATGATCAACCTATTGATCAATTGAAAGTTACTGAGCTGAATGATGAGCTTAAGAGAACGGAACTAGTTACGAAAGGTTTAAAGGAAGATATGATAAACTGTTTGGATGAAGTTCTTGCCATTGAAAAAGAGAAGGATGATGTTAGGAAAAGTTCTAAAACTGGTGAAACAGATGAAAAGGTTAACACTGCTAAAATTCATCCAGTTGAAACAGAAAACGAAGAAATGATTCCGGAGGTTGTGAATAACGACAGCGGAAAAAGTGATATCACCAAGCTGGTTGGCAATGATAGCAGTGCAATGGTGAGCCAAGAATTGGAACATACGGACTTATCAGCTGGTGCAGATTCTGCAAATGTGGTAGATGACTTAATTCACTCTTCGACTGAAGAGACCGCTGTTACAGTCGCTGAGAGTGTTGTAACAGAAGTAGTAGTCGGAGTTCAGGAGGATTCGTCTATTGTAGAGCCACAGAATGGTGTTGGTCAGGATTCTGTAACCAAGCAGGAAAATGAGGAGTCAAAGCCCCAGCTGGAATGTGACATAAAGCCCCCGGGTGTCAATCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCACATGTAATATCTGATTCTGTTTCTAGTAACTGTTTGTCGATTAATCAAAAGAATGAACTAAATGATACTGTAATTGCTAGTAATGCCAATTTAGAACAAGAAATTGTTAGGTCAGAGATGGTGGAAGAACCATTATCCAAAATTGATGTCCCTGTTTATGATGAATTGCATTCCATGGATGTTGAAGAGCTAGACGAGAAAAAGGCATATGTTGAGGAAAATAGCAGTAACAACAAAAGTCCAAACCCGGACAAGACCAATAGCAGTGAAGATGTTGGTTATCCAGAAAAGTTAAACTTGGATAGAAGTTCTAGTGGCGACTCCATGGAAGAGGATTTGCCGGAGAGCAAGCAATTTGATTCTAAGTTTAATGTTGATGAACTTGGAGTGAAGGGGGAAAGTGTTGAAAGGCCTATTGTGAAGGAGGAACGTGGTACTGCTGTGGTGGGAGAAGGTCTATCCTCAGAAAAAAGCGGTATccacaacaataataatattccTTCTGTTTCCCTtgttaagaaacaaaaattacatgATCGATTATCAGTTCGGAATACTCAGCCTAAAAAACGACAAAGAATGTGGAACTCTGAAACAGTTAAAGGTTCAAATCCGCAAATGTCTACTGTCAGACCTGCTAGTGCACCAATGGGTGAACCAAATGCTTTGAAGCGCAATTTATCTTGGTCTGATTCCTCAGCAATTAATGATGCGCCCAAAGAACGCATTGTTGCACCATCACAAAGGCTCCCAACTAATTCCCTCAGGATTGATCATTTCCTCCGACCTTTTACCTTGAAAGCAGTGCATGAACTCCTTGATAAAACTGGGAATTTCACTAGTTTTTGGATGGACGAAATAAAAACCCATTGCTACGTCAGTTACTCAACTGTCGAAGAAGCCATTGAGACCCGAAATGCTGTTTATAATCTTCAATGGCCCCCAAATGGTGGACGCCTTTTAGTTGCTGAGTATGTTGATCCCCAAGAAGTGCAAATGAAGCTAGGAGCTCCTCCTCATGTTGCCGTCAACAATGATTCAACAGTTCCTCCTGAAACACCTACCTCGCTGCCAGAGCCTTCCCGTCAGCCCAGGGAGCAGCCTCCAGTTCCAGTCACATTTCCTCCTCCACCACCATTGTCACAGCTCCCGCCAGCAGCTAGAGAATGGCTTCCACCGCAACCACTTTTGCCAGAGCCCCTGCCAGCAACTAGGGAACGACTTCCACCGCCACCACTGTCTGAGCTTCCACCAGCTGCTAGAGAATGGCTTCCGCTACCAGCATCCCTTCCAGAAAAAGTTGATCAGCCTATTCGCACAATTGATGATGTCTTTCGCAAAACCATAGCAACTCCTCAAATCTACTATTTACCGTTATCCGAAGAGCAAGTTGCAGCAAAACTGGCAGCACTGAGCAGAAGTGTTGATCAGTAA 2058 0.4252 MSSSTCPIGNDQPIDQLKVTELNDELKRTELVTKGLKEDMINCLDEVLAIEKEKDDVRKSSKTGETDEKVNTAKIHPVETENEEMIPEVVNNDSGKSDITKLVGNDSSAMVSQELEHTDLSAGADSANVVDDLIHSSTEETAVTVAESVVTEVVVGVQEDSSIVEPQNGVGQDSVTKQENEESKPQLECDIKPPGVNQVSEVNPSLGSHVISDSVSSNCLSINQKNELNDTVIASNANLEQEIVRSEMVEEPLSKIDVPVYDELHSMDVEELDEKKAYVEENSSNNKSPNPDKTNSSEDVGYPEKLNLDRSSSGDSMEEDLPESKQFDSKFNVDELGVKGESVERPIVKEERGTAVVGEGLSSEKSGIHNNNNIPSVSLVKKQKLHDRLSVRNTQPKKRQRMWNSETVKGSNPQMSTVRPASAPMGEPNALKRNLSWSDSSAINDAPKERIVAPSQRLPTNSLRIDHFLRPFTLKAVHELLDKTGNFTSFWMDEIKTHCYVSYSTVEEAIETRNAVYNLQWPPNGGRLLVAEYVDPQEVQMKLGAPPHVAVNNDSTVPPETPTSLPEPSRQPREQPPVPVTFPPPPPLSQLPPAAREWLPPQPLLPEPLPATRERLPPPPLSELPPAAREWLPLPASLPEKVDQPIRTIDDVFRKTIATPQIYYLPLSEEQVAAKLAALSRSVDQ 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00770 685 MobiDBLite consensus disorder prediction 282 301 - -
Tsu02g00770 685 CDD RRM_ACINU 460 540 IPR034257 -
Tsu02g00770 685 MobiDBLite consensus disorder prediction 394 425 - -
Tsu02g00770 685 MobiDBLite consensus disorder prediction 52 83 - -
Tsu02g00770 685 Coils Coil 222 242 - -
Tsu02g00770 685 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 608 - -
Tsu02g00770 685 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 613 681 - -
Tsu02g00770 685 SUPERFAMILY RNA-binding domain, RBD 454 542 IPR035979 GO:0003676
Tsu02g00770 685 MobiDBLite consensus disorder prediction 396 419 - -
Tsu02g00770 685 MobiDBLite consensus disorder prediction 280 329 - -
Tsu02g00770 685 MobiDBLite consensus disorder prediction 547 619 - -
Tsu02g00770 685 MobiDBLite consensus disorder prediction 52 98 - -
Tsu02g00770 685 Pfam RNSP1-SAP18 binding (RSB) motif 642 678 IPR032552 -
Tsu02g00770 685 MobiDBLite consensus disorder prediction 561 619 - -
Tsu02g00770 685 Coils Coil 19 39 - -
Tsu02g00770 685 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 608 - -
Tsu02g00770 685 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 613 681 - -
Tsu02g00770 685 MobiDBLite consensus disorder prediction 311 329 - -
Tsu02g00770 685 MobiDBLite consensus disorder prediction 165 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00770 Tsu-Chr2 6448549 6453101 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00770 K12875 - gmx:100786288 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00770 02 6448549 6453101 Tsu02g00770 02 6448549 6453101 ECH
Tsu02g00770 02 6448549 6453101 Tsu07g02306 07 26118402 26122130 ECH