Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00583 ATGGCAGCTGAGCTAGTCAATGCTGCAACAAGTGAGAAACTGTCTGAAATTGATTGgatgaaaaatattgaaatctCTGAATTAGTTGCTCGTGATCAAAGGAAAGCTAAAGATGTTGTTAAAGCTATAAAAAAGAGACTTGGTAACAAGAACCCTAATACTCAACTTTATGCTGTCATGTTGCTGGAAATGTTGATGAACAACATAGGAGATCCTATTCATCAGCAGGTGGTTGATGCAGAAATTATTcctatttttgtgaaaattgtaAAGAAAAAGTCAGATTTGCCTGTCAGGGAGCGAATATTTCTCCTACTAGATGCAACACAAACCTCTCTTGGTGGCGCTTCAGGAAAGTTTCCGCAGTATTACAAGGCATATTATGATTTGGTGAGTGCCGGGGTGCAATTTCCTCAAAGAGCTCAAATTGTCCAATCAAATCGTCCTAGTTCACAACCAAAGAGGACTGATAATGTACCAAATATGGAGCAAGTCCTGCTTAGACATGGAGGGGTTCCTCAAAAAGCAGAATCCAACACTGTTCCTGAATCTAGCATTATCCAAAAGGCCAGTAATGTGTTGGAAATTCTAAAAGAAGTCCTTGATGCTGTTGATGCTAAACATCCTCAGGGAGCAAGTGATGAATTCACCCTTGACCTTGTTGAGCAATGTTCATTTCAAAAGCAGAGGGTAATGCATCTTGTGATGGCTTCTCGAGACGAGAGGACAGTTTCCCGAGCAATCGAAGTGAACGAGCAGCTTCAGAAAGTTCTAGAGAGACATGATGACCTTCTTTCTAGCAAAGTTACAACAACTGTGAATCACTTGGACAGTGAAGAAGCAGAGGAGGAAGAAGAACCCGAACAGTTATTCAGAAGATTACGCAAAGGAAAAGCTTGTGTGAGgcctgaagatgaagaaactGAACCTCGGTTCCCTCAATTGAGTTTGCTTGAAGAGAGACTCAACCGTCCACTAATAAGACCTTTGGAACCATCTCATGAAGCTAATGCTCGTCCTGTACCTGTTGTAATTCCTCCTCCAAGTTCAAAACACGATGAAGAGCTTCCTCCTGTTACAATTCCACCGCCACCTTCAAAGCACGTCGAGAGAGAAAGATATTTTCAGCACAGTAAGGACGGTGGCACTTTGGCTGGTCACATCAGAGGCCTTTCTTTACATAGTCGCAATGGCAGCAGCTCGCAGAGTGGAAGCTTTGATTTTAGCGAGTGA 1233 0.4088 MAAELVNAATSEKLSEIDWMKNIEISELVARDQRKAKDVVKAIKKRLGNKNPNTQLYAVMLLEMLMNNIGDPIHQQVVDAEIIPIFVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYKAYYDLVSAGVQFPQRAQIVQSNRPSSQPKRTDNVPNMEQVLLRHGGVPQKAESNTVPESSIIQKASNVLEILKEVLDAVDAKHPQGASDEFTLDLVEQCSFQKQRVMHLVMASRDERTVSRAIEVNEQLQKVLERHDDLLSSKVTTTVNHLDSEEAEEEEEPEQLFRRLRKGKACVRPEDEETEPRFPQLSLLEERLNRPLIRPLEPSHEANARPVPVVIPPPSSKHDEELPPVTIPPPPSKHVERERYFQHSKDGGTLAGHIRGLSLHSRNGSSSQSGSFDFSE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00583 410 PANTHER TOM1-LIKE PROTEIN 1 409 IPR044836 GO:0035091|GO:0043130|GO:0043328
Tsu02g00583 410 Pfam VHS domain 5 112 IPR002014 GO:0035091|GO:0043130
Tsu02g00583 410 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Tsu02g00583 410 Gene3D - 183 275 IPR038425 -
Tsu02g00583 410 MobiDBLite consensus disorder prediction 331 410 - -
Tsu02g00583 410 SUPERFAMILY GAT-like domain 143 267 - -
Tsu02g00583 410 Coils Coil 187 207 - -
Tsu02g00583 410 Gene3D - 2 136 IPR008942 -
Tsu02g00583 410 SUPERFAMILY ENTH/VHS domain 4 140 IPR008942 -
Tsu02g00583 410 CDD VHS 2 130 - -
Tsu02g00583 410 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Tsu02g00583 410 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Tsu02g00583 410 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 409 - -
Tsu02g00583 410 MobiDBLite consensus disorder prediction 341 365 - -
Tsu02g00583 410 Pfam GAT domain 193 266 IPR004152 GO:0035091|GO:0043130
Tsu02g00583 410 MobiDBLite consensus disorder prediction 393 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00583 Tsu-Chr2 4912764 4916771 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00583 - - gmx:100802949 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00583 02 4912764 4916771 Tsu02g00583 02 4912764 4916771 ECH
Tsu02g00583 02 4912764 4916771 Tsu07g01245 07 10799717 10805695 PCT