Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00556 ATGGAAGCAATGAAGGGTTGTCATCATAATAAGGGATCAagatttgaagaagaagaagattgtaACAAAGATTTAGAAGCTGCAAAAACAAGAGTGGTTGCAAATGATGTTGTTACAGAAACTGAACTCACCAAAATCCGTCTTGTGAGAGCCTTTGTTGAAAAACATGATCCATCTTCTAAGGAAGAAGATGATTTGATGATTAGAAGATTTCTACGTGCTCGTGATTTAGATGTGGAGAAAGCTTCAGCAATGTTTCTTAAGTACTTGAAATGGAGACATTCATTTGTTCCAAATGGTTCCATATCTCTATCACAAGTTCCTAATCAAATTGCAGATGACAAGGCGTTTTTCCAAGGGCACGACAAGATTGGTCGACCTATACTTCTTGTCTTCGGTCgaaaacattttcaaaagaaaGATGGTCTAGATGAATTCAAAAGGTTTGTAGTCTATATTCTTGATAAAATAAGTGCAAGCATGCCACCCGGGGAAGAAAAATTTGTTGGTTTAGCAGAACTGAAGGGATGGGGTTACTCGAATAGCGATGTTCGAGGATACATTAATGCTCTCTCCATTTTGCAGGATTACTACCCTGAAAGATTGGGGAAGTTGTTTATTCTCCATGCACCATACATTTTTATGAAAGTGTGGAAAATAATTTACCCTTTCATTGACAACAAAACCAAGAAGAAGATAATATTTGTGGAAAACAATAAGGTGAAATCAACACTTCTAGAAGATATAGATGAAAGTCAGCTACCTGAGATATACGGAGGCAAACTGCAATTAGTCCCCGTCCAAGATAGTTAA 813 0.3555 MEAMKGCHHNKGSRFEEEEDCNKDLEAAKTRVVANDVVTETELTKIRLVRAFVEKHDPSSKEEDDLMIRRFLRARDLDVEKASAMFLKYLKWRHSFVPNGSISLSQVPNQIADDKAFFQGHDKIGRPILLVFGRKHFQKKDGLDEFKRFVVYILDKISASMPPGEEKFVGLAELKGWGYSNSDVRGYINALSILQDYYPERLGKLFILHAPYIFMKVWKIIYPFIDNKTKKKIIFVENNKVKSTLLEDIDESQLPEIYGGKLQLVPVQDS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00556 270 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 118 266 IPR001251 -
Tsu02g00556 270 PANTHER OS03G0850700 PROTEIN 18 270 - -
Tsu02g00556 270 Gene3D - 10 269 IPR036865 -
Tsu02g00556 270 Pfam CRAL/TRIO domain 115 260 IPR001251 -
Tsu02g00556 270 SUPERFAMILY CRAL/TRIO domain 114 263 IPR036865 -
Tsu02g00556 270 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 18 270 - -
Tsu02g00556 270 CDD SEC14 117 261 IPR001251 -
Tsu02g00556 270 SMART CRAL_TRIO_N_2 64 89 IPR011074 -
Tsu02g00556 270 SUPERFAMILY CRAL/TRIO N-terminal domain 38 99 IPR036273 -
Tsu02g00556 270 SMART sec14_4 110 263 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00556 Tsu-Chr2 4705322 4710177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00556 70 255 Acyl Lipid Metabolism Gene Families AT5G47730 27.228 1.30e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00556 - - mtr:MTR_8g096170 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00556 02 4705322 4710177 Tsu07g01193 07 10225454 10228128 ECH
Tsu02g00556 02 4705322 4710177 Tsu02g00556 02 4705322 4710177 ECH
Tsu02g00556 02 4705322 4710177 Tsu07g01193 07 10225454 10228128 PCT