Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00500 ATGACTCCTCTCATAAAAACCTTTCTATTTTCTCTCATCACTCTCTCCTTCACCCATACACAAGCAGCACAATTCGATATCAAAAACAATTGTAGGGATACCGTATGGGCTGCCGCTGTACCAGGCGGCGGTAAGCAATTAAACTCGGGCGAAACATGGACCATCAACGTAGCTGCAGGTACCAAAGCGGCCCGTATTTGGGCCCGAACCGGATGTAGCTTCGACGGTTCAGGCCACGGCCATTGCCAAACCGGCGACTGCGGTGGATTACTAAATTGCCAAGCTTACGGTACACCTCCAAACACACTAGCAGAATACGCTTTAAATCAATACATGAATTTGGACTTTTTTGACATTTCTCTTGTTGACGGATTCAATGTCCCTATGGATTTTAGTCCAACGTCAAATGGATGTACACGTGGCATACAATGTACGGCTGATGTTAATGGACAGTGTCCTAGTCAGCTTAAAACACAAGGGGGTTGTAACAACCCATGTACAGTTTTTAAAACTGATAATTACTGTTGTAATTCTGGTAGTTGTGGGCCTACTgattattcaaaatattttaagggTAAGTGTCCTGATGCTTATAGTTACCCAAAGGATGATGCCACAAGTACATTCACTTGCAATGGTGGAACCAATTATAAGGTTGTCTTTTGTCCATGA 672 0.4256 MTPLIKTFLFSLITLSFTHTQAAQFDIKNNCRDTVWAAAVPGGGKQLNSGETWTINVAAGTKAARIWARTGCSFDGSGHGHCQTGDCGGLLNCQAYGTPPNTLAEYALNQYMNLDFFDISLVDGFNVPMDFSPTSNGCTRGIQCTADVNGQCPSQLKTQGGCNNPCTVFKTDNYCCNSGSCGPTDYSKYFKGKCPDAYSYPKDDATSTFTCNGGTNYKVVFCP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00500 223 Gene3D Thaumatin 23 223 IPR037176 -
Tsu02g00500 223 SMART tha2 25 223 IPR001938 -
Tsu02g00500 223 PRINTS Pathogenesis-related protein signature 43 52 IPR001938 -
Tsu02g00500 223 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Tsu02g00500 223 PRINTS Pathogenesis-related protein signature 115 131 IPR001938 -
Tsu02g00500 223 PRINTS Pathogenesis-related protein signature 78 107 IPR001938 -
Tsu02g00500 223 PRINTS Pathogenesis-related protein signature 65 76 IPR001938 -
Tsu02g00500 223 PRINTS Pathogenesis-related protein signature 213 222 IPR001938 -
Tsu02g00500 223 CDD TLP-P 25 223 - -
Tsu02g00500 223 PANTHER THAUMATIN-RELATED 7 223 - -
Tsu02g00500 223 SUPERFAMILY Osmotin, thaumatin-like protein 23 223 IPR037176 -
Tsu02g00500 223 Pfam Thaumatin family 29 223 IPR001938 -
Tsu02g00500 223 ProSitePatterns Thaumatin family signature. 78 93 IPR017949 -
Tsu02g00500 223 PIRSF PR5 1 223 IPR001938 -
Tsu02g00500 223 ProSiteProfiles Thaumatin family profile. 22 223 IPR001938 -
Tsu02g00500 223 PANTHER OS03G0233200 PROTEIN 7 223 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00500 Tsu-Chr2 4185514 4186445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00500 4 223 Receptor kinase-like Gene Family AT5G38280 35.458 3.50e-41 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00500 - - oeu:111380489 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00500 02 4185514 4186445 Tsu02g00500 02 4185514 4186445 ECH
Tsu05g00294 05 2168976 2170122 Tsu02g00500 02 4185514 4186445 PCT