Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00413 ATGAATGATATTGTTCCCAAACACGAGCGCCGTTGGGCGTCAGATACTGTTCCCGGAAAAACAACTGTCAGCGCCGGAACATCGCCGGGAACTGAATCAAGTTTTGGCGCCGATGAGTTTGTTGAAGTCACTCTCGATCTTCGAGACGATGACACAATCGTTCTTCGTAGTGTTGAACCAGCTGTTATTAATATCGACGATTCCGTCGCCGGAAGCGGTTATGATACTCCGGTGTCTGTTCCATCGCCGTCGATCCGAAGAAGCTCTTCGAGAGGATTCCGGCATTTCTCACAGGAACTGAAAGCCGAAGCGGTTGCTAAAGCAAAGCAATTCTCACAGGAGCTACGGCGATTCTCGTGGAGTCACGGTCATGCTTCACGCACTCTTTCATCTTCCGCCGGTCATACGGGAACAAGCGCCACCGCTGGAAGTGGTTTTGAAACGGCGTTGGCTGCAAGAGCTTTGAGGAAGCAACGCGCACAGCTTGATCGGACTCGCACGGGTGCTCATAAAGCACTTCGTAGTTTGAAATTCATCAGCAGTAAATCAAACGGCGTTGATGCTTGGAACGAAGTGCTGAAAAATTTCGATAGACTTTCCAAAGACGGTTTTCTTCATCGCGTCGATTTCGGTCAATGCATAGGTATGAAAGATTCAAAGGAATTTGCTCTGGAACTGTTTGATGCTTTGGGGCGTAAACGAAGATTGAAGGTTGATAAAATAAGCAGGGAAGAACTTTATGAATTCTGGTCGCAAATTACTGATCAAAGTTTTGATTCACGGCTTCAGATCTTCTTCGACATGGTGGACAAGAACGAAGATGGAAGAATCACCGAAGAAGAAGTAAAAGAGATCATCATGTTAAGTGCTTCTGCAAATAAGTTATCTAGACTGCAGGAGCAGGCTGAAGAATATGCAGCTCTAATTATGGAAGAGTTAGACCCCGAGAGACTTGGCTACATTGAGCTATGGCAATTGGAGACACTTCTTTTACAAAAGGACACATATCTCAACTACAGTCAAGCTCTAAGCTATACAAGCCAAGCTCTAAGCCAGAACCTACAGGGGCTAAGAAAGAAAAGTCCTATACGTAGAATGAGCCGCAGATTTCTTTACTATTTACAAGAGAATTGGAGGAGAATCTGGGTTTTAACGTTATGGGTTTGCATAATGATTGGGCTCTTCACGTGGAAGTTTTTCCAATACAAGAAAAAGGATGCTTTTCATGTTATGGGTTACTGTCTTCTCACAGCCAAAGGTGCAGCTGAGACCCTGAAGTTCAACATGGCACTTATACTGTTTCCTGTTTGTAGAAACACCATAACTTGGCTCAGGTCTACAAAGCTGTCGTATGTTGTACCTTTTGACGATAACATCAACTTCCATAAGACAATTGCTGGGGCAATCGTGATTGGTGTTATACTTCATGTCGGGGATCACCTTGCTTGTGATTTTCCAAGACTTGTAAGGGTGTCTGAAGCTGATTATCAGAAGTATTTGAAAGGTGTATTTGGTGCTAACAAACCTAGTTATATAGACATAGTTAAAGGGATTGAGGGTGTCACTGGAATTTTGATGGTGGTTTTAATGGCAATAGCATTTACCCTCGCAACAAAATGGTTCAGGAGAAATCTCATTAAGCTGCCTAAACCATTTAGTAGGCTCACTGGCTTCAATGCCTTCTGGTATTCACACCATCTGTTTGTCATTGTCTATGTCCTGCTCATCATCCATGGTGTAAAAATGTACCTTGTGCGCAAATGGCAGTATGAAACgACATGGATGTATCTTGCGGTTCCAATTTTACTCTATGCATCAGAAAGAACACTCAGATTATTTCGTTCTGGTCTTTATACAGTCCGACTAATAAAGGTTGCTATTTACCCTGGAAATGTCCTCACATTGCAAATGTCCAAGCCTCCTCAATTTCGCTATAAAAGTGGACAATACATGTTTGTACAATGCTCTGCTGTGTCTCCGTTTGAGTGGCATCCATTTTCTATTACCTCAGCCCCTGGGGATGACTTTCTGAGTGTTCACATTCGGCAACTGGGTGACTGGACTCAGGAGCTTAAAAGGGTATTTTCTGAGGCCTGTGAGCCTCCTGTGTCCGGGAGGAGTGGGCTTCTCAGGGCTGATGAAACGACAAAGAAAAGTTTACCAAAGTTAAAGATAGATGGACCTTACGGGGCGCCAGCACAAgactataaaaaatatgatgttttGTTACTGGTCGGTCTTGGTATAGGAGCAACTCCTTTCATCAGCATTCTGAAAGATCTTCTCAACAACATTATCAAAATGGAGGAGCTGGCGGATTCAGTCTCTGAAACAAGTAGAGCTTCAGATGTTAGTGTTGGGAGTACTGATTCACCGTCATTTAATAAGATTGCTCCTAAAAGGAAGAAAACACTGAAGACTACCAATGCTTATTTCTATTGGGTTACAAGAGAGCAGGGCTCTTTTGATTGGTTCAAAGGAGTCATGAACGAAGTAGCTGAACTTGATCAAAGGGTATTAGTTATATTGCAGAAGATTTATGGTGTCATTGAGATGCATAACTACTTGACTAGCGTATATGAGGAAGGAGATGCTAGATCTGCCCTTATCACCATGGTTCAAGCACTAAACCATGCTAAAAATGGAGTTGATATTGTTTCTGGAACCAGGGTACGAACACATTTTGCTAGGCCTAATTGGAAGAAGGTTTTCTCTAAAATGTGTTCCAAGCACTATAGTGGACGAATAGGGGTATTTTACTGTGGTGCACCGGTTTTGGCCAAAGAACTTAATAAGTTATGCTTTGAGTTCAATGAAAAGGGTCCAACAAAGTTTGAGTTCCACAAGGAGCATTTCTAA 2859 0.4267 MNDIVPKHERRWASDTVPGKTTVSAGTSPGTESSFGADEFVEVTLDLRDDDTIVLRSVEPAVINIDDSVAGSGYDTPVSVPSPSIRRSSSRGFRHFSQELKAEAVAKAKQFSQELRRFSWSHGHASRTLSSSAGHTGTSATAGSGFETALAARALRKQRAQLDRTRTGAHKALRSLKFISSKSNGVDAWNEVLKNFDRLSKDGFLHRVDFGQCIGMKDSKEFALELFDALGRKRRLKVDKISREELYEFWSQITDQSFDSRLQIFFDMVDKNEDGRITEEEVKEIIMLSASANKLSRLQEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNLQGLRKKSPIRRMSRRFLYYLQENWRRIWVLTLWVCIMIGLFTWKFFQYKKKDAFHVMGYCLLTAKGAAETLKFNMALILFPVCRNTITWLRSTKLSYVVPFDDNINFHKTIAGAIVIGVILHVGDHLACDFPRLVRVSEADYQKYLKGVFGANKPSYIDIVKGIEGVTGILMVVLMAIAFTLATKWFRRNLIKLPKPFSRLTGFNAFWYSHHLFVIVYVLLIIHGVKMYLVRKWQYETTWMYLAVPILLYASERTLRLFRSGLYTVRLIKVAIYPGNVLTLQMSKPPQFRYKSGQYMFVQCSAVSPFEWHPFSITSAPGDDFLSVHIRQLGDWTQELKRVFSEACEPPVSGRSGLLRADETTKKSLPKLKIDGPYGAPAQDYKKYDVLLLVGLGIGATPFISILKDLLNNIIKMEELADSVSETSRASDVSVGSTDSPSFNKIAPKRKKTLKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRVLVILQKIYGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVFSKMCSKHYSGRIGVFYCGAPVLAKELNKLCFEFNEKGPTKFEFHKEHF 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00413 952 Gene3D Translation factors 606 698 - -
Tsu02g00413 952 MobiDBLite consensus disorder prediction 1 35 - -
Tsu02g00413 952 MobiDBLite consensus disorder prediction 1 15 - -
Tsu02g00413 952 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 615 735 IPR017927 GO:0016491
Tsu02g00413 952 ProSitePatterns EF-hand calcium-binding domain. 270 282 IPR018247 -
Tsu02g00413 952 Pfam Ferric reductase NAD binding domain 739 934 IPR013121 GO:0016491
Tsu02g00413 952 PRINTS Cytochrome B-245 heavy chain signature 744 761 IPR000778 GO:0016020|GO:0016491
Tsu02g00413 952 PRINTS Cytochrome B-245 heavy chain signature 521 544 IPR000778 GO:0016020|GO:0016491
Tsu02g00413 952 PRINTS Cytochrome B-245 heavy chain signature 721 734 IPR000778 GO:0016020|GO:0016491
Tsu02g00413 952 ProSiteProfiles EF-hand calcium-binding domain profile. 257 292 IPR002048 GO:0005509
Tsu02g00413 952 MobiDBLite consensus disorder prediction 17 34 - -
Tsu02g00413 952 CDD EFh 221 287 IPR002048 GO:0005509
Tsu02g00413 952 Gene3D - 730 952 IPR039261 -
Tsu02g00413 952 SUPERFAMILY EF-hand 189 339 IPR011992 -
Tsu02g00413 952 Pfam Ferric reductase like transmembrane component 420 576 IPR013130 -
Tsu02g00413 952 SFLD NADPH oxidase subgroup (NOX) 107 952 - -
Tsu02g00413 952 Pfam Respiratory burst NADPH oxidase 161 260 IPR013623 GO:0004601|GO:0050664
Tsu02g00413 952 Coils Coil 758 778 - -
Tsu02g00413 952 Gene3D - 162 278 - -
Tsu02g00413 952 SUPERFAMILY Riboflavin synthase domain-like 618 731 IPR017938 -
Tsu02g00413 952 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 736 952 IPR039261 -
Tsu02g00413 952 Coils Coil 288 308 - -
Tsu02g00413 952 PANTHER NADPH OXIDASE 29 952 - -
Tsu02g00413 952 CDD NOX_Duox_like_FAD_NADP 622 894 - -
Tsu02g00413 952 Pfam FAD-binding domain 619 732 IPR013112 GO:0016491
Tsu02g00413 952 PANTHER RESPIRATORY BURST OXIDASE2 29 952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00413 Tsu-Chr2 3450547 3460363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00413 10 952 Miscellaneous Gene Families AT1G64060 77.158 0.0 1518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00413 K13447 - gmx:100801077 1663.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00413 02 3450547 3460363 Tsu02g00413 02 3450547 3460363 ECH
Tsu05g00249 05 1824428 1831505 Tsu02g00413 02 3450547 3460363 PCT