Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00020 ATGATAACGTTAACAGATTTCTACCATGTAATGACAGCAATGGTACCACTTTACGTGGCTATGATATTAGCATATGGTTCAGTGAAAAGGTGGAAAATATTTTCTCCAAACCAATGTTCTGGCATCAACCGTTTCGTTGCTCTGTTTGCGGTTCCTTTACTTTCATTCAACTTCATTGCCTCTAACAATCCTTACAAAATGAACCTACGCTTCATTGCCGCAGACACACTTCAAAAGATCATTGTTTTACTTGCTCTCACTGTATGGACCAACATGAGCAAAAAAGGTTGTTTAGATTGGACAATTACATTCTTCTCCATTTCAACACTCCCAAACACTTTGGTGATGGGAATCCCTCTTTTGAAAGCCATGTACGGTGAATTTTCAAAGAGCTTGATGGTACAAATTGTGGTCCTTCAGTGTATAATATGGTACACATTCATCTCATTCCTGTTTGAGTACAGAGGAGCAAAAATGCTCATCTCAAAACAGTTTCCAAACACTGCTGGTACCATTGACTCCATTCAGGTTGATTCTGATGTCATGTCTTTGGCTGAAACACAATGTTTGGAAACACAAGTTGAAATCAAACAAGATGGGAAGCTTCATGTTACAGTCAAGAAATCAGATGCTTCCAGATCCGATATAATAAGGTCTCGAGCTTCCAATCTGACAAATGCAGAGATATACTCTTTGCAATCAACTACAAATCCAACTTCGAGAGTGTCCAGTTTCAACCATACAGATTTTTATTCCATGATGGGTGGTAGTAGTCATAATTCAAACTATAGTGCTTCTAATTTGAAAGAAACAACACTTGAGTCTTCTAATTATGATCATTCTACGAGGAAATACCTTATGCCTAACCATGGAATGATCTCTCTTGAGAATGAGAGGGTTAACGGTAGTACTACTCATACTCAAATAGCACAAAAAACATATGATCTTCATATGTTTGTTTGGAACTCAAGTGATTCCTCAATTTCTGATGTGTCTGGTTCTCATCATGAATATGAAGGAACAAGAACTGGAGTTCAAGTTCATCAagatcataaaataaataaatTGGAAGGTGAAGAGGCGTACATAGAATTGGAGTATGaaaagagagggaaaatgaATGAGGATGAGGAAGGTGGACACATGAACCCAAAAGCGATTCCACCAACAAGTGTAATGACAAGGTTGATATTGATAATGGTGTGGAGAAAACTGATTAGAAACCCAAACACATATTCCAGCATCATCGGCTTAACTTGGTCACTCATTTCATTCAGGTGGAATATTGAAATGCCTACTATCATAGCAAAGTCCATTTCCATATTGTCGGATGCAGCTCTTGGCATGTCCATGTTCAGTCTTGGTCTATTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATCGTTTAGCAGCTTTTTCTATGGCCATTAGATTCCTTACCGGTCCAATTGTCATGGCAATTGCTTCCATTATTGTTGGTCTCAGAGGAACCCTTTTGCACGTTGCCATTGTTCAAGCAGCTCTTCCACAAGGAATAGTTCCATTTGTCTTCGCTAAGGAATACGATGTACATCCTGATATTCTAAGCACAGGGGTAATATTTGGGATGTTTGTTGCATTGCCCACAACGCTCGTCTATTACATCTTGTTGGGGTTATAA 1665 0.3826 MITLTDFYHVMTAMVPLYVAMILAYGSVKRWKIFSPNQCSGINRFVALFAVPLLSFNFIASNNPYKMNLRFIAADTLQKIIVLLALTVWTNMSKKGCLDWTITFFSISTLPNTLVMGIPLLKAMYGEFSKSLMVQIVVLQCIIWYTFISFLFEYRGAKMLISKQFPNTAGTIDSIQVDSDVMSLAETQCLETQVEIKQDGKLHVTVKKSDASRSDIIRSRASNLTNAEIYSLQSTTNPTSRVSSFNHTDFYSMMGGSSHNSNYSASNLKETTLESSNYDHSTRKYLMPNHGMISLENERVNGSTTHTQIAQKTYDLHMFVWNSSDSSISDVSGSHHEYEGTRTGVQVHQDHKINKLEGEEAYIELEYEKRGKMNEDEEGGHMNPKAIPPTSVMTRLILIMVWRKLIRNPNTYSSIIGLTWSLISFRWNIEMPTIIAKSISILSDAALGMSMFSLGLFMALQPRIIACGNRLAAFSMAIRFLTGPIVMAIASIIVGLRGTLLHVAIVQAALPQGIVPFVFAKEYDVHPDILSTGVIFGMFVALPTTLVYYILLGL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00020 554 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1A 1 554 - -
Tsu02g00020 554 TIGRFAM 2a69: auxin efflux carrier 1 554 IPR014024 -
Tsu02g00020 554 Pfam Membrane transport protein 9 549 IPR004776 GO:0016021|GO:0055085
Tsu02g00020 554 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00020 Tsu-Chr2 132463 135756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00020 1 545 Organic Solute Cotransporters AT1G73590 60.353 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00020 K13947 - gmx:100499637 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00020 02 132463 135756 Tsu02g00020 02 132463 135756 ECH
Tsu02g00020 02 132463 135756 Tsu06g03729 06 49301750 49306796 PCT