Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04465 ATGGATTCATCTTTTTCACGTAACAACAAATCCACAAAACCTTCTTTATTATCATCCATCAGAAAAACTCATCTTTACTTTCTTCTCGTTTTTCTTTGTGGAGCCTTTTATCTCCTAGGCGCTTATCAACAACGTACACCATACACCACAACAGAAAAAACCACCATAACAACATGCAACAACTTTCCAAATCCCCAAAACACCCTCAATTTTCAATCACACCATAACGCaaccaccacaacaacaaccaccacaACCGAAACAATAATCTTCCCTCGCTGCAGCGCGAATTTCAGCGAATACACGCCATGTGAAGATCCAACAAGATCGTTAAGGTATAAACGTAGTAGAATGATTTATAGAGAAAGACACTGTCCAATTAGAGGTGAAGAAGATTTAAAGTGTAGAGTACCAGCACCGTATGGTTATCGGAATCCCTTTCCGTGGCCGGCAAGTAGAGATGTAGCTTGGTATGCTAATGTACCTCACCGTGAATTAACGGTTGAAAAAGCTGTTCAGAATTGGATCCGTTATGACGGTGATCGGTTCTTTTTTCCTGGTGGTGGAACTATGTTTCCTAATGGCGCTGATGCTTACATTGATGATATCGGAAAATTGATAAATCTTAAAGATGGTTCTATTAGGACTGCTCTTGATACTGGTTGTGGGGTGGCTAGTTGGGGTGCATATCTTGCATCACGTAACATAATAACATTATCAATAGCACCAAGGGATACACATGAAGCACAAGTTCAGTTTGCTCTAGAACGAGGTGTTCCTGCAATCATTGGTGTCTTAGCTTCCAAGAGATTACCTTTTCCTTCAAGAGCTTTTGACATTTCCCACTGTTCTCGTTGTTTAATTCCATGGGCTGAATATGATGgcatttttcttaatgaagTTGATCGAGTTTTGCGTCCGGGTGGTTACTGGATTTTATCTGGACCACCGATTAATTGGAAGAAACATTGGAGTGGGTGGCAGAGAACACAAAAGGATTTGAATGAAGAACAGACCAAAATTGAAAAGGTTGCTAAAAGTCTTTGTTGGAATAAGCTAATTGAGAAAGATGATCTTGCTATTTGGCAGAAACCCAAAAACCATCTAGATTGCAAATCTGCTCGTAAGCTCGCCACAAGCCGTCCCTTTTGCAGTGCACAAGATAGTCCTGACAATGCCTGGTATACCGAGTTGAAGACATGTTTGAGTCCTGTTCCTGAAGTTTCGAACAAAGACGAAACTGCTGGTGGGATATTGGAGAATTGGCCACAGAGACTTGAGTCGGTACCACCAAGGATTCACAAGGGTACTATTGAAGGGGTTACTACTGAAACTTTTTCTAAAGATTATGAGCTTTGGAAGAAAAGGGTGTCACATTATAAGAAAGTGAATAACCAACTAGGAACTACAAGATACCGTAACATCTTGGATATGAATGCTAACTTGGGTGGGTTTGCATCTGTTTTAATTAAGGATCCTGTTTGGGTCATGAATGTGGTTCCTGTTCAGGCTAAGGTTAATACACTTGGAGCAATATATGAAAGGGGATTGATTGGAATATATCATGATTGgtGTGAAGCAATGTCTACTTATCCAAGAACCTATGATTTAATTCATGCTGATTCACTGTTCAGCCTTTACAATGGCAGaTGTGAATTGGAAGACATGATGCTAGAAATGGATAGGATTCTTAGACCTGAAGGAGCAGTAATCATTAGAGATGATGTTGATGTATTGTTGAAAGTAAAGAACATTGCCAATGGATTGGAATGGGATAGTGTTATTGTGGATCATGAAGATGGACCACTTCAAAGGGAGAAACTTCTATTTGCTGTCAAGAAGTATTGGACTTCTCCTGCTGCTTCCCACAAGACTAATTAA 1881 0.3907 MDSSFSRNNKSTKPSLLSSIRKTHLYFLLVFLCGAFYLLGAYQQRTPYTTTEKTTITTCNNFPNPQNTLNFQSHHNATTTTTTTTTETIIFPRCSANFSEYTPCEDPTRSLRYKRSRMIYRERHCPIRGEEDLKCRVPAPYGYRNPFPWPASRDVAWYANVPHRELTVEKAVQNWIRYDGDRFFFPGGGTMFPNGADAYIDDIGKLINLKDGSIRTALDTGCGVASWGAYLASRNIITLSIAPRDTHEAQVQFALERGVPAIIGVLASKRLPFPSRAFDISHCSRCLIPWAEYDGIFLNEVDRVLRPGGYWILSGPPINWKKHWSGWQRTQKDLNEEQTKIEKVAKSLCWNKLIEKDDLAIWQKPKNHLDCKSARKLATSRPFCSAQDSPDNAWYTELKTCLSPVPEVSNKDETAGGILENWPQRLESVPPRIHKGTIEGVTTETFSKDYELWKKRVSHYKKVNNQLGTTRYRNILDMNANLGGFASVLIKDPVWVMNVVPVQAKVNTLGAIYERGLIGIYHDWCEAMSTYPRTYDLIHADSLFSLYNGRCELEDMMLEMDRILRPEGAVIIRDDVDVLLKVKNIANGLEWDSVIVDHEDGPLQREKLLFAVKKYWTSPAASHKTN 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04465 626 Gene3D Vaccinia Virus protein VP39 178 367 IPR029063 -
Tsu01g04465 626 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 15 620 IPR004159 GO:0008168
Tsu01g04465 626 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 100 613 IPR004159 GO:0008168
Tsu01g04465 626 PANTHER METHYLTRANSFERASE PMT20-RELATED 15 620 - -
Tsu01g04465 626 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 329 IPR029063 -
Tsu01g04465 626 CDD AdoMet_MTases 216 310 - -
Tsu01g04465 626 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 449 577 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04465 Tsu-Chr1 52297404 52306378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04465 - - gmx:100778314 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04465 01 52297404 52306378 Tsu06g03092 06 40691442 40700404 ECH
Tsu01g04465 01 52297404 52306378 Tsu01g04465 01 52297404 52306378 ECH