Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04459 ATGAATTCTAGGAGAGATGTTGAAAGTGGAGGGACAAAAAACAGAACAGGggacaacaacaacaccaacaattATTCTGCACCACCAGCTTCATCCTATGTTTATGATGATGCTGACAATCATCATAGGAATTCATGGCTTGTACCTCTTTTTGTGTTTGttaatgttgttgtttttattgtaGCCATGGGCATCAACAATTGTCCCCACAACAATTTCGGTTTTCAAGGTGATTGTGTTGCTAGATTCCTTGGCAGATTCTCTTTTCAACCTTTCAAAGAAAACCCATTGCTTGGTCCTTCTTCTTCAACATTAACCAAAATGGGAGCTTTAAGATGGAATAATGTTGTGCACCAGCATCAGGGATGGAGACTTTTCACTTGTATTTGGTTACATGCTGGAATTATTCACTTAGTATCGAACATGGTGAGCCTCGTGTTCATTGGAATTCGCCTCGAACAGCAATTCGGGTTTCTGAGGATTGGATTGATATACCTATTATCTGGATTTGGTGGAAgtgttctttcttctctttttattAGAAATAGCATCTCTGTTGGTGCTTCTGGTGCGCTCTTTGGACTCCTTGGAGCAATGCTATCAGAACTTCTTACAAATTGGACTATATATTCCAATAAAGTGATGGCTTTGTTCACCCTTCTCATTATCATTGTCGTCAACCTCGCTATAGGCATTTTGCCGCACGTTGATAACTTTGCTCACATTGGGGGGTTTGTGGTAGGATTTCTCCTTGGTTTCATTTTGTTGCCACGTCCTCAATTCGGTTGGTTAGAGCAGCGACGTCTTCCTGCTGGTATTCGCCTCAAGTCAAAATTCAAAGCTTACCAATATGTTCTTGGGATTGTCTCTCTAATTCTCTTGATTATAGGGTTATCAATTGGAACTGTGATGCTATTCAAGGGTAAAAATGGATATGATCATTGCCATTGGTGTCATTACCTAACATGTGTGCCAAGCTCTAAATGGGAATGCAACAATGACAGTTAA 1008 0.381 MNSRRDVESGGTKNRTGDNNNTNNYSAPPASSYVYDDADNHHRNSWLVPLFVFVNVVVFIVAMGINNCPHNNFGFQGDCVARFLGRFSFQPFKENPLLGPSSSTLTKMGALRWNNVVHQHQGWRLFTCIWLHAGIIHLVSNMVSLVFIGIRLEQQFGFLRIGLIYLLSGFGGSVLSSLFIRNSISVGASGALFGLLGAMLSELLTNWTIYSNKVMALFTLLIIIVVNLAIGILPHVDNFAHIGGFVVGFLLGFILLPRPQFGWLEQRRLPAGIRLKSKFKAYQYVLGIVSLILLIIGLSIGTVMLFKGKNGYDHCHWCHYLTCVPSSKWECNNDS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04459 335 Gene3D - 39 258 IPR035952 -
Tsu01g04459 335 PANTHER RHOMBOID-RELATED 5 333 IPR002610 GO:0004252|GO:0006508|GO:0016021
Tsu01g04459 335 MobiDBLite consensus disorder prediction 13 28 - -
Tsu01g04459 335 Pfam Rhomboid family 117 259 IPR022764 GO:0004252|GO:0016021
Tsu01g04459 335 SUPERFAMILY Rhomboid-like 41 260 IPR035952 -
Tsu01g04459 335 PANTHER RHOMBOID-LIKE PROTEIN 3 5 333 - -
Tsu01g04459 335 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04459 Tsu-Chr1 52273512 52275416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04459 - - gmx:100813345 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04459 01 52273512 52275416 Tsu06g03094 06 40736127 40740038 ECH
Tsu01g04459 01 52273512 52275416 Tsu01g04459 01 52273512 52275416 ECH