Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03951 ATGTTGGGTTCTTCTTCAAAAGTTGGAAACATTAGCTATGATTACTCTTTTAAGGTTTTGTTAGTTGGTGATTCTGGTGTTGGCAAAAGTagtcttcttcttagtttcATCTCTGATTCTAACTCAGTTCATGACCTCTCTCCCACTATTgGagtagatttcaaaatcaagcATTTTACAATTGGTGGTAAAAGATTGAAGCTTACTATTTGGGACACAGCTGGACAAGAGAGGTTTGGAACAGTGATATGCTCTTATTACAGAGGCGCACATGGAATCATTCTCGTGTACGATGTTACACGGCGTGAGACATTTACAAACCTAGTGGGCATATGGGCCAAAGAGGTTGGACTTTACTCCACAAATCATGATTGCATCAAAATTCTTATTGGCAATAAGGTGGATAAGGAAAGTGAAAGAGCTGTAACCAAAGAAGAGGGAATGGCTCTTGCAAAAGAACATAGATGCTTGTTCTTAGAATGTAGTGCCAAAACTAGAGAAAATGTTCAACAATGCTTCGAGGACCTCACATTAAAGATATTAGAGGTGCCAAGTTTGCGAGAAAAGGGATCTGTAGAAGTGAAGAGACAAAAGCAAAAGCGCATATACGAGACATCACAAAGAGGTGGCTGTTGTTCTTAG 642 0.3723 MLGSSSKVGNISYDYSFKVLLVGDSGVGKSSLLLSFISDSNSVHDLSPTIGVDFKIKHFTIGGKRLKLTIWDTAGQERFGTVICSYYRGAHGIILVYDVTRRETFTNLVGIWAKEVGLYSTNHDCIKILIGNKVDKESERAVTKEEGMALAKEHRCLFLECSAKTRENVQQCFEDLTLKILEVPSLREKGSVEVKRQKQKRIYETSQRGGCCS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03951 213 PANTHER DRAB5-RELATED 4 213 - -
Tsu01g03951 213 SMART rho_sub_3 19 183 IPR001806 GO:0003924|GO:0005525
Tsu01g03951 213 SMART ran_sub_2 22 213 - -
Tsu01g03951 213 Pfam Ras family 18 181 IPR001806 GO:0003924|GO:0005525
Tsu01g03951 213 Gene3D - 10 212 IPR027417 -
Tsu01g03951 213 SMART ras_sub_4 14 183 - -
Tsu01g03951 213 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 4 213 - -
Tsu01g03951 213 TIGRFAM small_GTP: small GTP-binding protein domain 15 174 IPR005225 GO:0005525
Tsu01g03951 213 CDD Rab18 17 180 - -
Tsu01g03951 213 SMART rab_sub_5 17 183 - -
Tsu01g03951 213 ProSiteProfiles small GTPase Rab1 family profile. 12 213 - -
Tsu01g03951 213 ProSiteProfiles small GTPase Ras family profile. 4 213 IPR001806 GO:0003924|GO:0005525
Tsu01g03951 213 PRINTS Transforming protein P21 ras signature 158 180 - -
Tsu01g03951 213 PRINTS Transforming protein P21 ras signature 123 136 - -
Tsu01g03951 213 PRINTS Transforming protein P21 ras signature 41 57 - -
Tsu01g03951 213 PRINTS Transforming protein P21 ras signature 59 81 - -
Tsu01g03951 213 PRINTS Transforming protein P21 ras signature 17 38 - -
Tsu01g03951 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 201 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03951 Tsu-Chr1 47111454 47115094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03951 16 173 EF-hand Containing Proteins AT5G27540 27.879 1.29e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03951 K07910 - gmx:100809867 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03951 01 47111454 47115094 Tsu01g02331 01 25012965 25014974 ECH
Tsu01g03951 01 47111454 47115094 Tsu01g03951 01 47111454 47115094 ECH