Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02331 ATGAGTTCTtctggtcaaaatagtagctaTGATCTCTCTTTCAAGATCTTGTTGATTGGTGATTCAGCTGTGGGAAAAAGTAGCTTAATTGTTAGCTTCATCTCTGGCTCTGTTGAAGATATTGCCCCTACAATTGGTGTTGATTTTAAGATCAAGCTTCTAACAGTAGGTGACAAAAGATTGAAACTAACTATTTGGGATACCgCTGGGCAGGAACGGTTCAGAACGCTAACAAGTTCTTACTATAGAGGAGCGCAAGGAATCATTCTCGCTTATGATGTAACAAGAAGAAATACATTTACAAACTTATCAGAGGTGTGGTCCAAAGAAGTGGAACTCTATTCAACTAATCAGGATTGTGTGAAGATGCTGGTTGGAAATAAAGTTGATAGAGAATCTGAAAGGGCTGTGAGCTCAGAAGAGGGTTTAGCTCTTGCCAAAGAGTTCGgatgtttgttttttgaatGCAGTGCCAAAACTCGAGAAAACGTAGACAAGTGCTTCGAAGAGCTTGTACTAAAGATAATGGAAGTTCCTAGCCTTTTGGAAGAAGGATCAACGTCACTGAAAAGGAATATTTTAAAGCAAAAACAGGAACCACAAGCATCCCAAGATGTTGGTTGTTGCTTGTAA 633 0.3728 MSSSGQNSSYDLSFKILLIGDSAVGKSSLIVSFISGSVEDIAPTIGVDFKIKLLTVGDKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILAYDVTRRNTFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDRESERAVSSEEGLALAKEFGCLFFECSAKTRENVDKCFEELVLKIMEVPSLLEEGSTSLKRNILKQKQEPQASQDVGCCL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02331 210 ProSiteProfiles small GTPase Rab1 family profile. 9 209 - -
Tsu01g02331 210 SMART rab_sub_5 14 178 - -
Tsu01g02331 210 SMART arf_sub_2 1 179 - -
Tsu01g02331 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 193 IPR027417 -
Tsu01g02331 210 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
Tsu01g02331 210 PANTHER DRAB5-RELATED 2 210 - -
Tsu01g02331 210 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Tsu01g02331 210 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Tsu01g02331 210 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Tsu01g02331 210 ProSiteProfiles small GTPase Ras family profile. 6 210 IPR001806 GO:0003924|GO:0005525
Tsu01g02331 210 Gene3D - 7 209 IPR027417 -
Tsu01g02331 210 PANTHER SMALL MONOMERIC GTPASE-RELATED 2 210 - -
Tsu01g02331 210 PRINTS Transforming protein P21 ras signature 14 35 - -
Tsu01g02331 210 PRINTS Transforming protein P21 ras signature 54 76 - -
Tsu01g02331 210 PRINTS Transforming protein P21 ras signature 118 131 - -
Tsu01g02331 210 PRINTS Transforming protein P21 ras signature 153 175 - -
Tsu01g02331 210 PRINTS Transforming protein P21 ras signature 36 52 - -
Tsu01g02331 210 CDD Rab18 14 175 - -
Tsu01g02331 210 SMART ras_sub_4 11 178 - -
Tsu01g02331 210 SMART ran_sub_2 19 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02331 Tsu-Chr1 25012965 25014974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02331 13 158 EF-hand Containing Proteins AT5G27540 28.947 1.56e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02331 K07910 - gmx:100818801 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03951 01 47111454 47115094 Tsu01g02331 01 25012965 25014974 ECH
Tsu01g02331 01 25012965 25014974 Tsu01g02331 01 25012965 25014974 ECH
Tsu07g03923 07 45361043 45363690 Tsu01g02331 01 25012965 25014974 PCT