Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03871 ATGGCGGCTGGTCCAGCATCAACCACCACCACAACAACCACCGATCGACCTTCCATgccaccaacaacaacaaccgttcctcttcaaccaccaccaccaatgCTAGTTTCTGATTCATTCGCTAAAGATGCTATTCTCGCTTGGTTTCGTGGCGAGTTTGCTGCTGCTAATGCTATCATTGATGCTCTCTGTTCTCATCTCTCTCATCTTTCATCTTCTGCTGATTATACCAATGTTTTCGCTGCTATTCATCGTCGTAGACTTCATTGGATCCAAATCCTTCAGATGCAGAAGTATCACTCCATTGCGGATGTCGCTTTTCAGCTTCGTATAGTCGCTGAAAATAACAAAACTGCGCTTGAAGAACAACAAGATTTCATTCAAAACGATGTCGTTTCGGAGGAGCCGGAGCCAGAGGTGGAAGAACAGAAAACAGAGGAAAAAGTCATCAATGGTGGTGATGAACACGAGGAGTATGATTCACCCGAGAGTGAGATCACTGATTCAGGATCTCAAGAAAACCAGACTAGTTCAATGAACATTGACATATGTTCCAATCATGAAGAGTGTGAAGAACGTCCTTCACAGTTTAAGTTGACAAAAGGTTTCACAGCAAAGGAGTCAGTGAAGGGGCACATGGTGAATGTTGTGAAAGGGTTGAAGTTATATGAAGATGTTTTCACTGATTCAGAATTGTGCAAGCTGTCAGATTTTGTCAATGAGATCCATACTGCTGGTCAGAATGGGGAACTGTCTGGtgaaacttttatattattcaaCAAACAGATAAAGGGTAACAAGAGAGAGCTGATTCAGCTTGGTGTTCCAATCTTTGGACAGATAAAGGAGGACACAAAAAGTAATATAGAGCCAATTCCAGCACTTCTGCAACGTGTCATCGATCACTTTATTCAATGGCATTTACTTCCAGAGTACAAAAGACCAAATGGTTGTATCATCAACTTTTTTGAAGAAggGGAGTTTTCCCAGCCATTCCTGAAACCACCACATCTGGATCAACCTGTGACCACTCTTCTTCTCTCTGAATCAACCATGGCTTTTGGGCGTATCCTTGTGAGTGAAAACGACGGGAACTACAAGGGACCACTCATGCTCTCATTGAAGCAGGGGTCTCTTGTTGTGATGAGAGGAAACAGTGCTGACATGGCAAGACACGTCATGTGTCCATCTCCCAACAGAAGGGTGAGCATCACCTTCTTTAGAGTGAGGCCAGACTCCAATCAATGCCAATCACCAACTCCTACCATGACAAATTCAATGACTCTCTGGCAACCTGCCATTGCTAATCCATATGCTTTGCCAAATGGAACTATAAGTTGCGGCTATGAAGGTATGGACATGATGATGCCCAAATGGGGAATGCTTCCTGGCCCGATGATGATGCTGACACCTATGCGTCCTGTGGCATTGAATCCTCGTAAACTTGCTGGTGGTGGTACTGGAGTCTTCTTGCCATGGAATGTCCCATCCAGAAAACCTGCAAAGCATCTTCCACCACGTGCACAGAAAGGAAGGCTTCTAGCATTGCCTTCTCCTGTTGAGCCACACATTGCGGAGTCCACTTCTGAACCCAGCATTTGTGTCGAAGGATGA 1614 0.4294 MAAGPASTTTTTTTDRPSMPPTTTTVPLQPPPPMLVSDSFAKDAILAWFRGEFAAANAIIDALCSHLSHLSSSADYTNVFAAIHRRRLHWIQILQMQKYHSIADVAFQLRIVAENNKTALEEQQDFIQNDVVSEEPEPEVEEQKTEEKVINGGDEHEEYDSPESEITDSGSQENQTSSMNIDICSNHEECEERPSQFKLTKGFTAKESVKGHMVNVVKGLKLYEDVFTDSELCKLSDFVNEIHTAGQNGELSGETFILFNKQIKGNKRELIQLGVPIFGQIKEDTKSNIEPIPALLQRVIDHFIQWHLLPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVTTLLLSESTMAFGRILVSENDGNYKGPLMLSLKQGSLVVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQSPTPTMTNSMTLWQPAIANPYALPNGTISCGYEGMDMMMPKWGMLPGPMMMLTPMRPVALNPRKLAGGGTGVFLPWNVPSRKPAKHLPPRAQKGRLLALPSPVEPHIAESTSEPSICVEG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03871 537 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 314 411 IPR005123 -
Tsu01g03871 537 MobiDBLite consensus disorder prediction 130 177 - -
Tsu01g03871 537 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 28 535 - -
Tsu01g03871 537 MobiDBLite consensus disorder prediction 142 157 - -
Tsu01g03871 537 MobiDBLite consensus disorder prediction 1 32 - -
Tsu01g03871 537 MobiDBLite consensus disorder prediction 1 22 - -
Tsu01g03871 537 SUPERFAMILY Clavaminate synthase-like 211 410 - -
Tsu01g03871 537 Gene3D - 203 418 IPR037151 -
Tsu01g03871 537 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 28 535 IPR044842 GO:0003729|GO:0006402|GO:0032451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03871 Tsu-Chr1 46488177 46493420 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03871 K10767 - gmx:100791586 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03871 01 46488177 46493420 Tsu01g03871 01 46488177 46493420 ECH
Tsu07g03536 07 41499372 41504778 Tsu01g03871 01 46488177 46493420 PCT