LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g03844	atgacagGCCTTGTCATGGTTACTAGAGGCGGTGGATGCGGTGGTGGAACCAGTAAAAGAACAAGAGCAACACGAGCAgctgaagaagaacaagaacaacaGAACCAGCTTTCACTTGTAGCTTTACTTGTAGCAGCAATTAGAAAATCTATGGTGGCATGCAGAGTAGACAGACCTGATGAAGTCATCTCAACCGTTCATCAAATGGAGATCGGATGGCCAACTGATGTTCAACATATTACTCATGTTACCTTTGACCGTTTCAATGGCTTTCTTGGTCTTCCTGTTGAGTTTGAGGTTGAGATCCCTGGTCGTGTTCCAAGTGCTAGTGTAAGTGTGTTCGGAGTCTCGGCAGAATCTATGCAGTGTTCTTATGATACTAAGGGCAACAGTGTCCCAACTATTCTCATGCTAATGCAGGACCGATTGTATTCGCAGGGAGGACTAAAGGCTGAAGGTATATTTCGCATAAACCCAGAAAATAGTAAAGAGGAGCATGTGAGGAACCAGTTGAATAGTGGTATTGTGCCTGATGACATTGATGTCCATTGCTTGGCGGGACTAATCAAAGCGTGGTTCCGAGAACTTCCTTCGGGAGTGCTAGATGGACTTTCCCCTGAACAAGTTCTTCAATGCAACACAGAAGAAGAATCTATTGATCTTGTGAAGCAGCTAAAGCCAACTGAGTCTGCCTTACTCAGCTGGGCTATTGATCTCATGGCTGATGTTGTTCAAGAGGAGGAGTATAACAAAATGAATGCAAGAAACATCGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCTCTAACTGCTCTAATGCATGCGGTTCAAGTGATGAACTTTCTCAAGACATTGATAACGAAGACCCTTAGGGAACGTGAAGAAACAGCAACAGGTGGATATTCACCTATGTCCTTTCGCACATCATTTCGCCGGTCAGAGGATGAATACGACAGTCAGCGAGAAACAGCAACAGGTGGATATTCACCTATGTCCTTTCGCTCATCATATCGCCCGTCTGAGGATGAATATGACAGTCAACGCGAAATGGACGCAAGCGGTGAATTGAGACAGACCAAATCAGATTTTGACGATCACACTCATTACAGAAATAGCAGTGAAGAGGAATTGGAGGTGGCTGAATCTCTAAGTGAGATAGAAGAatgcttcttaaaaaaattggatgAGCACACCAAAGAATTCTCAGAAGAACCTAAAGATTATTTGCAAGAAGAGTATGTGAGCTCCAAAAGTTGCTGTGACTATAGTGTGGAACCTGCTGAATCAATTACCGATATCAAAATTGTGAAGTGCTGCTTGAGTCCCGACAAAGAAAAGCTAAATGCTGACACAACGACTCCATTGCTAGGATGGATAGAGACCGAAAATGTGGAGATGGTTGATAAGTTCACAGATTCTGTTACGCCGGTGCCGCCGCTGCTTGCATCTAGCTAA	1464	0.4255	MTGLVMVTRGGGCGGGTSKRTRATRAAEEEQEQQNQLSLVALLVAAIRKSMVACRVDRPDEVISTVHQMEIGWPTDVQHITHVTFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQCSYDTKGNSVPTILMLMQDRLYSQGGLKAEGIFRINPENSKEEHVRNQLNSGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESIDLVKQLKPTESALLSWAIDLMADVVQEEEYNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLITKTLREREETATGGYSPMSFRTSFRRSEDEYDSQRETATGGYSPMSFRSSYRPSEDEYDSQREMDASGELRQTKSDFDDHTHYRNSSEEELEVAESLSEIEECFLKKLDEHTKEFSEEPKDYLQEEYVSSKSCCDYSVEPAESITDIKIVKCCLSPDKEKLNADTTTPLLGWIETENVEMVDKFTDSVTPVPPLLASS	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g03844	487	MobiDBLite	consensus disorder prediction	1	30	-	-
	Tsu01g03844	487	Gene3D	CRIB domain	66	102	IPR036936	-
	Tsu01g03844	487	SMART	PBD_5	71	105	IPR000095	-
	Tsu01g03844	487	PANTHER	MKIAA1688 PROTEIN	330	459	IPR044785	GO:0005096
	Tsu01g03844	487	PANTHER	MKIAA1688 PROTEIN	1	330	IPR044785	GO:0005096
	Tsu01g03844	487	SMART	RhoGAP_3	130	293	IPR000198	GO:0007165
	Tsu01g03844	487	MobiDBLite	consensus disorder prediction	297	360	-	-
	Tsu01g03844	487	Pfam	RhoGAP domain	133	267	IPR000198	GO:0007165
	Tsu01g03844	487	Gene3D	Rho GTPase activation protein	103	295	IPR008936	GO:0007165
	Tsu01g03844	487	SUPERFAMILY	GTPase activation domain, GAP	112	290	IPR008936	GO:0007165
	Tsu01g03844	487	CDD	RhoGAP	133	290	-	-
	Tsu01g03844	487	Pfam	P21-Rho-binding domain	70	99	IPR000095	-
	Tsu01g03844	487	CDD	CRIB	69	109	-	-
	Tsu01g03844	487	MobiDBLite	consensus disorder prediction	341	360	-	-
	Tsu01g03844	487	MobiDBLite	consensus disorder prediction	325	339	-	-
	Tsu01g03844	487	ProSiteProfiles	Rho GTPase-activating proteins domain profile.	116	296	IPR000198	GO:0007165
	Tsu01g03844	487	PANTHER	RHO GTPASE ACTIVATION PROTEIN-RELATED	330	459	-	-
	Tsu01g03844	487	PANTHER	RHO GTPASE ACTIVATION PROTEIN-RELATED	1	330	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g03844	Tsu-Chr1	46254079	46257068	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g03844	-		-	mtr:MTR_1g089500	828.165

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g03844	01	46254079	46257068	Tsu01g03844	01	46254079	46257068	ECH
	Tsu07g04173	07	47414136	47417692	Tsu01g03844	01	46254079	46257068	PCT