Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03829 ATGCTTAGATGCATAGCTCATTTTCTAGAAATGACAGAAGACTTTGCGGAGAAAAACTTGTTGACGCGAGCTGAATCATATCTAAAAGAGACAGTGCTCTCAAACACGGCAAATACAATATTTGTTCTTCACCGTTGCGAAACTCTCCTACCTTTTTCAGAAGAGATTAACCTTGTTAACAGACTAATCAATGCAATTTCAAGTAATGTGTGCAAAGAGGAACTTACTTCTGGTTTGCAAAAACTAGACTATAATTTCCCTTCTAAAACCATTGAACCTGAAACACCTTCACAATGGTGGGGGAAATCGCTTACTGTTCTTAACCTTGATTTCTTCAAACGAGTTTTATCCACGATGAAGTCAAAAGGGCTAAAACAAGAAATTATCGGCAAAATTTTGATAAACTATGCACATAATTCTCTTCAAGTAATCAAAGGAAGTTTACTTGACTTAGAAGTTTTGAAGAATCAAAGGATCCTTGTTGAAACAATAACTAGTTTATTACCAACTCAATCAAGGAAAAGCCAAGTTCCAATAGCTTTTCTCTCAAGTTTGTTGAAATCTGCAATAGCAACTTCAGCATCTACTTCTTGTAGATCGGATTTGGAGAGGCGGATTGGTCTACAACTTGACCAAGCAATTCTTGAAGACATTCTGATTCCAACAAGTtcatatcaaaataataacCGCAGTAGTACTATTTATGATATAGATTCAATTGTGAGGATTTTTTCGACTTTTCTTAACTTGGATGAACAGGATGAGGACGATAGTCAGTTAAGAGACGAAAATGAAATGGTTTATGATTTTGATAGCCCTGGATCTCCAAAACAAAGCTCAATCCTTAAGGTATCCAAATTGCTGGACAATTATCTTGCTGAAGTTGCATTAGACCCAAACATGTTTCCATCAAAGTTCATATCACTCGCTGAATTGCTTCCCGATCATGCCCGTATTGTAAGCGATGGACTCTATAGAGCAGTCGATATCTTCCTTAAGGTTCATCCAAACATAAAGGAATCCGAGCGATACCGATTATGCAAAACCATAGATTGCCAAAAACTATCACAAGAAGCATGCAGCCATGCAGCACAAAATGAAAGACTACCAGTTCAAATGGCAGTACAAGTTCTATACTTCGAACAAATCCGTCTTCGCAACGCCATGAATGGAGGAGGACACAATCAATTACTCTTTGGTGGACTAAATGGTCAATTCCCTCAACGTTCAGGTAGTGGTGCAGGAAGTGGAGCAATGTCACCTAGAGATAACTATGCATCGGTTAGAAGAGAGAATCGAGAACTGAAACTCGAAGTTACAAGAATGAGAATGAGACTCACTGATCTAGAGAAAGATCATGTTTCTATGAAACAAGAGCTTGTTAAGTCTCATCCTGCTAATAAGCTATTTAAATCATTTACTAAAAAATTAAGCAAGCTTAATGCATTGTTTAGGATTAATGGTATTAAGACTAATGGTGTTGGTTCAGAGAGAAGAATCCCAACTTCCGCGTCGAGATGGTGGAAAGATATTTGTGTTCTAGATAAGGTGGTAGAGTCCAAAAATTGGTTAGTGGAGTCGGTGTCTAGGAAGGTGGGTAATGGTAGCTCTACTCATTTTTGGACTTCTCTTTGGATTGGTGAGGTTCCTCTTTCGGTTGCTTTCCCTCGATTGTTCTCCCTCTCCAATCAAAAGAATAACATGGTGATCGATTTCCGTGAAAATCACGGAGAGACTTGGTGTTGGACTTTCTCTTGGCGTAGGGACCTTTTCCATTGGGAGGTTGATCTTGTTGCCCGGTTGAGAGAGATTCTTGATCCGGTTGTGTTCTCTTTGGAGGATGACTTTTGGAGTTGGAGGTCGGACTCGGATGGTGTGTTCTCGGTTAATTCTTCTTATAACTTTTTAGTTGAAGAACTTCGGATTGTTGAAGAGTTGGAGGATGACAAGTTGTGGGTTTTCGATCATATTTGGGATAGCCCGACGCCTTCTAAAGTAATTGCTTTCTCTTGGCAACTACTCTATGATCGGATCCCAACTAGGTGTAACCTTGAGGCCCACGGGTTGCTTGGCACTGATTTGCCTTGGGAGTTGGGAGTGTGTTGGGTGTGTTGGTAG 2118 0.3952 MLRCIAHFLEMTEDFAEKNLLTRAESYLKETVLSNTANTIFVLHRCETLLPFSEEINLVNRLINAISSNVCKEELTSGLQKLDYNFPSKTIEPETPSQWWGKSLTVLNLDFFKRVLSTMKSKGLKQEIIGKILINYAHNSLQVIKGSLLDLEVLKNQRILVETITSLLPTQSRKSQVPIAFLSSLLKSAIATSASTSCRSDLERRIGLQLDQAILEDILIPTSSYQNNNRSSTIYDIDSIVRIFSTFLNLDEQDEDDSQLRDENEMVYDFDSPGSPKQSSILKVSKLLDNYLAEVALDPNMFPSKFISLAELLPDHARIVSDGLYRAVDIFLKVHPNIKESERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGGHNQLLFGGLNGQFPQRSGSGAGSGAMSPRDNYASVRRENRELKLEVTRMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTKKLSKLNALFRINGIKTNGVGSERRIPTSASRWWKDICVLDKVVESKNWLVESVSRKVGNGSSTHFWTSLWIGEVPLSVAFPRLFSLSNQKNNMVIDFRENHGETWCWTFSWRRDLFHWEVDLVARLREILDPVVFSLEDDFWSWRSDSDGVFSVNSSYNFLVEELRIVEELEDDKLWVFDHIWDSPTPSKVIAFSWQLLYDRIPTRCNLEAHGLLGTDLPWELGVCWVCW 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03829 705 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 1 500 - -
Tsu01g03829 705 ProSiteProfiles NPH3 domain profile. 98 384 IPR027356 -
Tsu01g03829 705 Coils Coil 425 452 - -
Tsu01g03829 705 Pfam NPH3 family 98 360 IPR027356 -
Tsu01g03829 705 PANTHER OS12G0117600 PROTEIN 1 500 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03829 Tsu-Chr1 46082319 46086511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03829 2 334 EF-hand Containing Proteins AT2G47860 58.772 1.27e-126 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03829 - - mtr:MTR_1g088885 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03829 01 46082319 46086511 Tsu01g03829 01 46082319 46086511 ECH
Tsu07g04197 07 47620505 47624231 Tsu01g03829 01 46082319 46086511 PCT