Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03723 ATGAACTACAGCCGTTTGATTTCCGGCGGAGGAAGACTTCTCCGTCGACTATCCACGGAGGCGACGGTGGCTGAGATTCCTAAGAGAAAACCAAGTCTTTACCAAAAACTAGCGGAGCTAGAAAAAACCGGCGGAACCGTGTCGCAGACGTTGAACCAGTATATAATGGAAGGAAAAGCCGTCGGAAAAAGTGAACTCGAGAAATGCGTCGAGGAGCTTCGAAAGTATCGTAGATTTCATCACGCATTTGAGATACTGGAATGGATGATGATGaggaaaatcaatttttcatgGGATAATTATGCAGTGTATTTAGATCTTATGTCAAAAGTGAAAGGTGTGGTTGATGCTGAAAATTACTTCAACAGTCTTCCAAATCCTGCTAAGAATAAGTACACATGGGGTTCTCTGCTAAATTGTTATTGCAAAGAATTGATGCTAGATAAGGCATTGTCTCATTTTGAGAAGATGGATGAATTAGGGTTTGTTACTAGTTTATCTTTCACCAATTTGATGGCTTTGTATATGAAGTTAGGTCAACCTCTGAAAGTTCATAAGCTAGTTAATGATATGAAGGTGAGGAAAATGCGTATGACTGGATTTACTTAcattgtttggatgaatagCTGTGCTGCTTTGAATGATCTTGATGGGGTTGAAAGTGTTTATGAGgagatgaaaagagaaaatgaaGGCAAAATTGATTGGAAGACTTATAGTAACCTTGCTGCTATTTATGTAAAAGCTGGAGAATTTGTGAAAGCTGAGTTGATGCTTAAGAAGATGGAAAAAGTAGTGAGGCCGCAGCAACGCGAAACTTATCATTGCTTGCTGAGTCTTTATGGTGGGACTGGTAATGTTACAGAGGTTTATAGAGTGTGGAGGAAGCTCAAGACGGTCTCCCCGGTGACTAATCGGAGCTATCTTATTATGCTTTCTACCCTTCGAAGGCTTAATGATATGGAGGgtataataaaattgtttaagGAGTGGGAATCTAGGCGTGTTAATTATGATGCAAGGGTGGTTGGTGTTGCAGTGGATGCTTACTTGAGTCAAAACATGGATGAAGAAGCTGTGTCGATCTTTGAGGAGGCTCGCAAGACGTGCAGAGGACCTTTGTTTAGGATTCGGGAAATGTTCATGGTGTCTTTATTGGAGAAAGGTCGATTGGATGGTGCTATCACTGCTATAAGCCACTTAGAGGCCGCGCTTTCAGAAGTCAGCAGTGATAAATACCGCCCTTCACCACAAGTTGTGAGTGCTTTTCTTAAGTATTATGAAGAACAAACAGATCTTGATGGTGTTGATGAGTTAAGCAAAATTCTCAGGAGTCACAATTTTGATGAATCCCTTATTAAAACTTGCATTACTGCATCCGAATCATCTCCTGGTATTCATCCGGTATTGAAGGAAGATTCTTATGTCGACCATGAGCACCAGAACTTGTAA 1452 0.3926 MNYSRLISGGGRLLRRLSTEATVAEIPKRKPSLYQKLAELEKTGGTVSQTLNQYIMEGKAVGKSELEKCVEELRKYRRFHHAFEILEWMMMRKINFSWDNYAVYLDLMSKVKGVVDAENYFNSLPNPAKNKYTWGSLLNCYCKELMLDKALSHFEKMDELGFVTSLSFTNLMALYMKLGQPLKVHKLVNDMKVRKMRMTGFTYIVWMNSCAALNDLDGVESVYEEMKRENEGKIDWKTYSNLAAIYVKAGEFVKAELMLKKMEKVVRPQQRETYHCLLSLYGGTGNVTEVYRVWRKLKTVSPVTNRSYLIMLSTLRRLNDMEGIIKLFKEWESRRVNYDARVVGVAVDAYLSQNMDEEAVSIFEEARKTCRGPLFRIREMFMVSLLEKGRLDGAITAISHLEAALSEVSSDKYRPSPQVVSAFLKYYEEQTDLDGVDELSKILRSHNFDESLIKTCITASESSPGIHPVLKEDSYVDHEHQNL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03723 483 Gene3D Tetratricopeptide repeat domain 32 167 IPR011990 GO:0005515
Tsu01g03723 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Tsu01g03723 483 Pfam PPR repeat 132 162 IPR002885 -
Tsu01g03723 483 Pfam PPR repeat 201 230 IPR002885 -
Tsu01g03723 483 Pfam PPR repeat 238 264 IPR002885 -
Tsu01g03723 483 Pfam PPR repeat 167 194 IPR002885 -
Tsu01g03723 483 PANTHER OS12G0527900 PROTEIN 3 483 - -
Tsu01g03723 483 TIGRFAM PPR: pentatricopeptide repeat domain 132 163 IPR002885 -
Tsu01g03723 483 TIGRFAM PPR: pentatricopeptide repeat domain 201 230 IPR002885 -
Tsu01g03723 483 SUPERFAMILY TPR-like 121 366 IPR011990 GO:0005515
Tsu01g03723 483 Gene3D Tetratricopeptide repeat domain 303 468 IPR011990 GO:0005515
Tsu01g03723 483 Gene3D Tetratricopeptide repeat domain 183 302 IPR011990 GO:0005515
Tsu01g03723 483 PANTHER OS01G0301500 PROTEIN 3 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03723 Tsu-Chr1 44988368 44990102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03723 28 444 EF-hand Containing Proteins AT1G02150 34.038 6.53e-76 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03723 - - gmx:100781679 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03723 01 44988368 44990102 Tsu01g03723 01 44988368 44990102 ECH
Tsu01g03723 01 44988368 44990102 Tsu07g04052 07 46493957 46494973 PCT