Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03604 ATGAGTGTATATGAGAGAAGCCAACTTCAGCTACTACTTCCTTCTTTCCACTATCTACCCAACATTCCTTCACCTTTCTCACTCACCAGTACGTTCCTAACGATTTTCTCTATGGCAAACAAGTATCTGTTGGTGGCTTGCTGTTTGTGGGCTTTGACATGCTCACTTCTTCCTTCTTTCTCCTATGGACTTATGCGGATTGATTTGAAGAAGAGAACTCTAGATCTTGAAAGTATTAAAGTTGCTAGAATGGTGAGAGAAAAGCTAAAGTCAAGTAGACCCGTGTTGGGTGCAAATGACCAGTATACTGCTAAATCAACCGATGATGCCATCGTGCCTTTGAAGAATTATTTGGATGCACAATATTACGGAGAGATTGGAATTGGCACACCTCCACAGACCTTTAATGTCATATTTGATACTGGTAGTTCCAACCTCTGGGTTCCATCTTCGAAGTGCTATTTTTCTCTTGCTTGCTACACCCATCATTGGTACAAGGCAAAGAAATCCAAAACATATACCAAAAATGGAACATCATGTAAAATAGCATATGGATCTGGAGCAATATCTGGTTTTTTCAGTAAAGATAATGTTAAACTTGGTGATGTTGTTGTCAAGGATGTGGATTTCATTGAGGCTACCCGTGAAGGAAGTATTTCCTTTGTGCTGGCAAAGTTTGATGGATTACTTGGGCTTGGATTTCAGGAGATCTCTGTTGAAAATGCTGTGCCAGTATGGTACGAAATGGTGCAGCAAGATCTAGTAAATGAGCAGGTGTTCTCTTTTTGGCTCAATGGGGATCCAAAAGCGAAAAAGGGTGGCGAGCTAGTTCTTGGGGGTGTTGATCCGAATCACTTCAAAGGAAAACATATATATGTTCCAGTCACAGAAAAAGGCTATTGGCAgTTCAATATGGGAGATTTTTTCATCGGAGGTCTTTCAACAGGTGTTTGCGAAAGTGGCTGTGCTGCTATTGTGGATTCAGGAACATCATTGCTTGCTGGTCCAACTACTGTTGTGACCGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAATTGTTACTGAATATGGAGAATTGATATGGGATCTCTTGGTAGCTGGGGTAAGACCTGGTGATGTATGTTCACAAGTTGGTTTATGTGTTTCCAAGAGGGATCAATCTAAGAGCATGGGGATTGAGATGGTTACTGAAAAGGAACAAGGAGAGTTATCTGCTAAAGATACTGCTTTGTGCTCTTCTTGTCAGATGCTTGTGATTTGGATCCAGAATCAACTAAAACGAAAGTCAACTAAGGATAGAATATTCAACTACGTAAATCAACTATGTGAGAGCTTGCCAAGTCCTAATGGAGAGTCCATAGTAGACTGTAATAGCATTTATCAATTGCCAAATATTTCGTTTACTATCGGAGAGAAATCTTTCGTTCTCAGTCCAGAGCAGTATATCTTGAAAACCGGAGAAGGCATTGCACAAGTCTGCCTCAGTGGGTTTATTGCTTTTGACATTCCTCCTCCACGGGGTCCTCTCTGGATTCTTGGCGATATTTTCATGAGGGTATATCACACTGTCTTTGACTATGGAAATCTCCAACTTGGTTTTGCTGAAGCTGCTTAG 1638 0.409 MSVYERSQLQLLLPSFHYLPNIPSPFSLTSTFLTIFSMANKYLLVACCLWALTCSLLPSFSYGLMRIDLKKRTLDLESIKVARMVREKLKSSRPVLGANDQYTAKSTDDAIVPLKNYLDAQYYGEIGIGTPPQTFNVIFDTGSSNLWVPSSKCYFSLACYTHHWYKAKKSKTYTKNGTSCKIAYGSGAISGFFSKDNVKLGDVVVKDVDFIEATREGSISFVLAKFDGLLGLGFQEISVENAVPVWYEMVQQDLVNEQVFSFWLNGDPKAKKGGELVLGGVDPNHFKGKHIYVPVTEKGYWQFNMGDFFIGGLSTGVCESGCAAIVDSGTSLLAGPTTVVTEINHAIGAEGVLSVECKEIVTEYGELIWDLLVAGVRPGDVCSQVGLCVSKRDQSKSMGIEMVTEKEQGELSAKDTALCSSCQMLVIWIQNQLKRKSTKDRIFNYVNQLCESLPSPNGESIVDCNSIYQLPNISFTIGEKSFVLSPEQYILKTGEGIAQVCLSGFIAFDIPPPRGPLWILGDIFMRVYHTVFDYGNLQLGFAEAA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03604 545 Gene3D Acid Proteases 281 545 IPR021109 -
Tsu01g03604 545 SUPERFAMILY Saposin 353 454 IPR011001 -
Tsu01g03604 545 Pfam Saposin-like type B, region 2 356 388 IPR008138 -
Tsu01g03604 545 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 137 148 IPR001969 GO:0004190|GO:0006508
Tsu01g03604 545 Gene3D Acid Proteases 65 280 IPR021109 -
Tsu01g03604 545 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 41 545 - -
Tsu01g03604 545 Pfam Saposin-like type B, region 1 418 454 IPR007856 GO:0006629
Tsu01g03604 545 ProSiteProfiles Saposin B type domain profile. 415 456 IPR008139 -
Tsu01g03604 545 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 324 335 IPR001969 GO:0004190|GO:0006508
Tsu01g03604 545 SUPERFAMILY Acid proteases 54 544 IPR021109 -
Tsu01g03604 545 CDD phytepsin 112 543 IPR033869 GO:0004190
Tsu01g03604 545 PRINTS Pepsin (A1) aspartic protease family signature 518 533 IPR001461 GO:0004190|GO:0006508
Tsu01g03604 545 PRINTS Pepsin (A1) aspartic protease family signature 274 287 IPR001461 GO:0004190|GO:0006508
Tsu01g03604 545 PRINTS Pepsin (A1) aspartic protease family signature 128 148 IPR001461 GO:0004190|GO:0006508
Tsu01g03604 545 PRINTS Pepsin (A1) aspartic protease family signature 324 335 IPR001461 GO:0004190|GO:0006508
Tsu01g03604 545 Gene3D - 352 454 - -
Tsu01g03604 545 SMART sapb_4 316 388 IPR008139 -
Tsu01g03604 545 Pfam Eukaryotic aspartyl protease 121 544 IPR033121 -
Tsu01g03604 545 ProSiteProfiles Saposin B type domain profile. 352 392 IPR008139 -
Tsu01g03604 545 ProSiteProfiles Peptidase family A1 domain profile. 122 542 IPR033121 -
Tsu01g03604 545 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 41 545 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03604 Tsu-Chr1 43881138 43885892 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03604 K08245 - gmx:547993 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03604 01 43881138 43885892 Tsu01g03604 01 43881138 43885892 ECH
Tsu07g04376 07 49028930 49033404 Tsu01g03604 01 43881138 43885892 PCT