Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03588 ATGGCTCCTGATCTCATAACCGCTGCAACCAACATCACCAATGCTCAAGGTAAGGCCACAAAACGCGCTTTTGTGACCTTCCTTGCCGGAAATGGTGACTATGTTAAGGGTGTCGTTGGTTTAGCCAAAGGCCTCCGTAAGGTTAAAACCATGTACCCTCTAGTGGTTGCAGTTTTGCCTGATGTTCCGGTTGAACACCGGAATATTCTCATTTCTCAGGGTTGCATTGTTAAAGAGATTGAACCTGTTTACCCTCCTGAGAATCAAACTCAATTTGCTATGGCTTATTATGTCATCAACTACTCCAAATTGCGTATTTGGGCTTTGGAGGATTATGACAAGATGATTTACCTTGATGGTGACATACAAGTTTTTCAAAACATTGACCACTTATTTGACTTGCCAAATAACTATTTCTATGCTGTAAAGGACTGTTTTTGTGAGGCCTCTTGGCGTCACACTAAGCAATATGAAATCGGTTACTGTCAACAGTGTCCTGATAAGGTTCAATGGCCAACAAATTTTGGGCCCAAACCACCTCTGTACTTCAATGCTGGCATGTTTGTTTATGAACCTAATATGACTACTTATCATGATCTCCTTCAAAAACTTCAAGTCACTAAGCCAACTTCCTTCGCTGAGCAGGATTTCTTGAACATGTACTTCAATGACAAATACAGGCCAATTCCTAATGTTTATAATCTTGTGCTGGCCATGCTATGGCGTCACCCTGAGAATGTTGAGCTTGAAAAAGTTAAAGTTGTTCATTATTGTGCAGCTGGGTCTAAGCCTTGGAGGTATACTGGGGAGGAAGAGAATATGCAAAGAGAAGATATTAAGATGTTGGTAAATAAATGGTGGGATGTGTATGAAGATGAAAGTTTAGATTACAAGGAACCCATTAATGCAAATAAGTTAACATCAGCAATTTTAGATGCTAGTGGTATCAAGTTTGTACCTGCTCCATCTGCTGCTTAA 978 0.4029 MAPDLITAATNITNAQGKATKRAFVTFLAGNGDYVKGVVGLAKGLRKVKTMYPLVVAVLPDVPVEHRNILISQGCIVKEIEPVYPPENQTQFAMAYYVINYSKLRIWALEDYDKMIYLDGDIQVFQNIDHLFDLPNNYFYAVKDCFCEASWRHTKQYEIGYCQQCPDKVQWPTNFGPKPPLYFNAGMFVYEPNMTTYHDLLQKLQVTKPTSFAEQDFLNMYFNDKYRPIPNVYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYTGEEENMQREDIKMLVNKWWDVYEDESLDYKEPINANKLTSAILDASGIKFVPAPSAA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03588 325 Pfam Glycosyl transferase family 8 26 268 IPR002495 GO:0016757
Tsu01g03588 325 SUPERFAMILY Nucleotide-diphospho-sugar transferases 25 298 IPR029044 -
Tsu01g03588 325 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 19 296 IPR029044 -
Tsu01g03588 325 PANTHER GALACTINOL SYNTHASE 2 1 315 IPR030515 GO:0006012|GO:0047216
Tsu01g03588 325 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 315 - -
Tsu01g03588 325 CDD GT8_Glycogenin 22 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03588 Tsu-Chr1 43779500 43781043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03588 1 325 Glycosyltransferase AT1G56600 70.149 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03588 K18819 - gmx:548050 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03588 01 43779500 43781043 Tsu01g03588 01 43779500 43781043 ECH
Tsu07g04394 07 49155294 49157141 Tsu01g03588 01 43779500 43781043 PCT