Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02880 ATGTTCTCCAAGAGAAAAAATCAAACTTCCTTCTGCTACTACCTCAACAACAATCTGAACCTTCACATTTATACAAGACCTATATCCAGTCTCAAAGTAGTATGGCGCAAGGACCCATTACTAGATCAAGCCATAGAACACGATAAACGCTTCAAGCAATGTGCTCGCGTCGTCAAAGAAGTTCTCAATGAACCAGGTCAAGTCATCCCTCTACGCTACCTCGAAAAACGCCGTGAAAGGATGCGACTCAAGGTTAAAATCGAAACCTTTTTGAATCAAAACCcctttttatttgatatatattaTGATCGCATTAAACCCAAAACCGAACCCGTTAAATTTATCCGGGTCAGCGATCAGCTCCTTCAGTTTCTGGAGGAAGAGAAACAAATTTATAAGGAGAATGAACCGTTAATTGTTTCTAAGTTGTGTAAAATGTTGATGATGTCAAAGAATAAGGTTGTTAGTGCTGATAAATTGCTTCATGTGAAGAGGGAATTTGGTTTCCCTAAtgattttttggttgatttggttCCTAGGTATTCGGAATATTTTAGGTTAACTGGTTTACCCGGGGAGGGAAAATCATTTCTTGAATTGGTTAATTGGAACCCTGAGTTTGCAAAATCTGTTATTGAGAAAAGGGCTGAAGAGGAAAGTAGGCTTACTGGGATTAGGGTTAGGCCTAGTTTCAATGTAAAGCTTCCTCCAGGGTTTGTGTTGAAGAAGGAGATGAGGGAGTGGACTAGGGATTGGATGGAGCTTGATTATGTATCGCCTTACGAGGATGTTTCACATTTGGAGCAAGCTTCAAGAGAGATGGAGAAAAGGTCTGTTGGGGTGTTCCATGAATTGCTTTCTCTTTCGCTGTATAAAAGGATTCCGGTACCGATTCTTGGAAAGTTTTGTGATGAATATAGGTTTTCGAATGCTTTTTCAAGCGCTTTTACAAGGCACTCGGGTATATTCTATATGTCGTTAAAAGGTGGGATTGAAACTGCAATGCTGAGAGAAGCATATGAAGGAGATAAGTTGATTGACATTGATCCACTGCTTCAGATAAAAGAGAGATTTGCTGAGTTGCTGAAGGAGGGTTGGCGGCAAAGAGCGGAGCAGTTGAGgttgaaacaagaaaaaattaaacaagataTGGAACTTGTGGCCACAAGAGTTTCTGAATAA 1182 0.3858 MFSKRKNQTSFCYYLNNNLNLHIYTRPISSLKVVWRKDPLLDQAIEHDKRFKQCARVVKEVLNEPGQVIPLRYLEKRRERMRLKVKIETFLNQNPFLFDIYYDRIKPKTEPVKFIRVSDQLLQFLEEEKQIYKENEPLIVSKLCKMLMMSKNKVVSADKLLHVKREFGFPNDFLVDLVPRYSEYFRLTGLPGEGKSFLELVNWNPEFAKSVIEKRAEEESRLTGIRVRPSFNVKLPPGFVLKKEMREWTRDWMELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYEGDKLIDIDPLLQIKERFAELLKEGWRQRAEQLRLKQEKIKQDMELVATRVSE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02880 393 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 17 388 IPR045040 GO:0003723
Tsu01g02880 393 Coils Coil 363 383 - -
Tsu01g02880 393 Coils Coil 115 135 - -
Tsu01g02880 393 Pfam Plant organelle RNA recognition domain 37 366 IPR021099 GO:0003723
Tsu01g02880 393 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 17 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02880 Tsu-Chr1 34676313 34680003 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02880 - - lang:109336290 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02880 01 34676313 34680003 Tsu01g02880 01 34676313 34680003 ECH
Tsu07g04167 07 47363733 47366315 Tsu01g02880 01 34676313 34680003 PCT