Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02854 ATGGATCTCACTCAAGCCACACTAGAGATCTTCTCCAAACTTGAACACAAATGGCTTTCTCATTGCAAAGACACCACCAAAACTCGCATTCTCAGCATTGACGGCGGAGGAACCACCGCCATTGTAGCCGGCGCTGCATTAATCCATCTCGAGGATCAGATCCGTCTCCAGACCTCCGATCTCCACGCTCAGGTATCAGATTTCTTCGACATTGTTGCCGGTACCGGCATTGGCGCCATTCTTGCTGCAATGATAACTGCCGCAGATTCATTAGGTAGGCCTCTGTATACGGCAAGAGAAGCCGTCGGTATCATCACTGAAAGAAACTCTGAACTGTACAAACACAAATCCGCCGGAGTTTTTCGCCGTCGCCGGAGATTCTCTTCGAAGAACATGGATAACGTGTTGAAGCAAGTGTTCCTTAGAAAAGAAGATCAAAAGTTGTTGACCTTGAAGGACACGTGTAAACCGTTACTTATACCTTGCTTTGACCTCAAGAGTTCGGCTCCATTCGTTTTTTCACGAGCCGATGCGTTAGAATCTCCAAGCTTCAACTTCGAACTCTGGAAAGTGTGCCGTGCCACATCAGCAACACCGAGCCATTTCAAGCCGTTTAACTTCACCTCCGTCGACGGAAAAACCTCCTGCTCCGCCGTAGACGGCGGTTTAGTCATGAATAATCCAACAGCTGCTGCAGTCACGCATGTTCTCCATAACAAACGCGATTTTCCAACGGTAAACGGCGTGGAGGATCTTTTGGTTCTTTCATTGGGAAACGGATCGTCGAACTCGAAGACATGCGAGAATCGCACGTGCTCAACGCCGTCTGTAGTTGACATTGTTCTCGACGGTGTTTCCGAGACTATTGACCAAATGCTTGGAAACGCTTTCTGTTGGAATCGTACGGATTACGTCAGAATTCAGGCGTTTGGTCTGGGAAGCGAAGGAGGGACGGAGGAGGAGGTGCTGAAAGAGAGAGGATTGGAATCGTTACCGTTTGGCGGGAAGCGATTAATGACGGAGACTAACGGAAACAGAATTGATAGCTTTGTGCAACGTCTTGTTGCTACCGGAAAACCCAGTCCTCCGTTCAGTCCTTGA 1101 0.4877 MDLTQATLEIFSKLEHKWLSHCKDTTKTRILSIDGGGTTAIVAGAALIHLEDQIRLQTSDLHAQVSDFFDIVAGTGIGAILAAMITAADSLGRPLYTAREAVGIITERNSELYKHKSAGVFRRRRRFSSKNMDNVLKQVFLRKEDQKLLTLKDTCKPLLIPCFDLKSSAPFVFSRADALESPSFNFELWKVCRATSATPSHFKPFNFTSVDGKTSCSAVDGGLVMNNPTAAAVTHVLHNKRDFPTVNGVEDLLVLSLGNGSSNSKTCENRTCSTPSVVDIVLDGVSETIDQMLGNAFCWNRTDYVRIQAFGLGSEGGTEEEVLKERGLESLPFGGKRLMTETNGNRIDSFVQRLVATGKPSPPFSP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02854 366 Pfam Patatin-like phospholipase 31 232 IPR002641 GO:0006629
Tsu01g02854 366 CDD Pat17_PNPLA8_PNPLA9_like 30 309 - -
Tsu01g02854 366 Gene3D Cytosolic phospholipase A2 catalytic domain 16 360 - -
Tsu01g02854 366 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 233 IPR002641 GO:0006629
Tsu01g02854 366 PANTHER PATATIN 2 366 - -
Tsu01g02854 366 PANTHER PATATIN-LIKE PROTEIN 6 2 366 - -
Tsu01g02854 366 SUPERFAMILY FabD/lysophospholipase-like 27 309 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02854 Tsu-Chr1 34299350 34300858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02854 1 366 Acyl Lipid Metabolism Gene Families AT3G63200 70.699 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02854 - - gmx:100777557 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02854 01 34299350 34300858 Tsu01g02854 01 34299350 34300858 ECH
Tsu07g03578 07 41957654 41959165 Tsu01g02854 01 34299350 34300858 PCT