Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02827 ATGGCATTTAAAGGGTATGTCCTATGTCTAATTATGATCCTAGTGGCCAATATGATGACTCAAAATGCAGCCCAATCAAGTTGTACTTCTACACTCACTAGTTTGAGCCCTTGTCTAAACTATATAATGGGGAGTTCTTCAAACCCATCAGCTTCATGTTGTTCACAACTTTCAACTGTAGTTCAATCTTCTCCACAGTGTCTCTGCTCCTTGCTTAATGGTGGTGGCTCCTCTTTCGGAATCACCATAAATCAAACTCTTGCTCTGTCTCTCCCTTCTGCTTGTAAAGTTCAAACTCCACCTGTTAGTCAGTGCAAAGGTGGCAATGGACCAATATCTCCTTCAAGTTCAAGTTCAATGTCTCCGATGGGGTCTCCTGTTGATTCACCAACTGATTCTTCAGCTGAATCACCTGAAGGCTCAATAACACCTTCTGCTTCAAACCTTCCCTCAGCAGGAGGAGGTTCAAAAAGTGTTCCATCAACAAACGGTGGCTCATCTGGTGGAAGCACCATTAAAGTTTCATCCAACTTTGTTATTTCTCTTCTTGCCATTGTGTTTTGTGTTGTCaccaagttttga 582 0.4158 MAFKGYVLCLIMILVANMMTQNAAQSSCTSTLTSLSPCLNYIMGSSSNPSASCCSQLSTVVQSSPQCLCSLLNGGGSSFGITINQTLALSLPSACKVQTPPVSQCKGGNGPISPSSSSSMSPMGSPVDSPTDSSAESPEGSITPSASNLPSAGGGSKSVPSTNGGSSGGSTIKVSSNFVISLLAIVFCVVTKF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02827 193 MobiDBLite consensus disorder prediction 102 167 - -
Tsu01g02827 193 SMART aai_6 28 105 IPR016140 -
Tsu01g02827 193 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 106 IPR036312 -
Tsu01g02827 193 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 190 IPR043325 -
Tsu01g02827 193 Pfam Probable lipid transfer 12 105 IPR016140 -
Tsu01g02827 193 Gene3D - 24 103 IPR036312 -
Tsu01g02827 193 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Tsu01g02827 193 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Tsu01g02827 193 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Tsu01g02827 193 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 190 - -
Tsu01g02827 193 CDD AAI_LTSS 35 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02827 Tsu-Chr1 33823830 33824752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02827 8 190 Lipid Metabolism Gene Families AT3G22600 45.455 2.24e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02827 - - gmx:100306151 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02827 01 33823830 33824752 Tsu01g02827 01 33823830 33824752 ECH
Tsu01g02827 01 33823830 33824752 Tsu07g03601 07 42182148 42183113 PCT