Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02798 atGGAACCTAAGTTAACAATAAATTGTCACAGAAATGAGTTTCAgcttccaacaacaacaaacaatgGAAGTAGTACTCGTTTACCAGAGAGTCCAAGAATACCAATGGAGTTTCTTTCAAGGTCATGGAGTGCCTCTGCCTTTGAGGTCTCTAAAGCCTTGTCACCtcaaccaccaccacctccttCTACCTTACCTTCCAATAATAAGACTTCTACTAACTCTATTCCTGAAGAAACTATTACTACTCTCTCTCAACAATTCTCAACCATGTGTGGAAATCAATTCTCTTTTGTTTCCTCTGCTACTTCACAGCTTGTACTTGAACGTATCATGTCACAGTCCACAAGAGAGGAAGTATCTCCATTAACATCAGGTAGATTGTCCCATAGCAGTGAACCATTGAATGGTGGTGGTTCTTTAACAGGAACTGATAGTCCACCAATTTCTCCTTCTGATGAGTTTGATGATATTGTTAAGTTTTTTCGAGCAAACAATTCGATACACCCTTTATTCAATGGTACAAGAGCCATGAGCACTGGAATTGGCAATGCAACTCCTTGTTCAGGACCTAAAACAGTAGGAAGAtggttgaaagaaagaagagaaaaaaagaaagaagaaaacagAAGCCATACTGCTCAAGTTCATGCTGCTATTTCTGTAGCGGCGGTTGCTTCCGCACTTGCAGCCATCACTGCAGCAACAGCAGCATCATCATCTGCACCTAACAAAGATGAGAAGATGGCTAAGACTGATATGGCTGTGGCTTCTGCAGCAACACTAATTGCTGCTCAGTGTGTTGAAGCTGCTGAAGCTATGGGAGCTGAAAGAGAACACCTTGCTTCTGTTGTTAGTTCTGCTGTTAATGTTCGGTCGCATGATGATATTACAACTCTAACTGCTGCAGCTGCCACAGCTCTAAGGGGGGCAGCAACATTGAAAGCAAGAGCATTGAAAGAGATGTGGAATATTAGTGCAGTGACACCACTTGAGAAAAGCATAGGAATTGGAATTTGTGGTGgtaaagctaataataataataacagtaGTTCTAGCACTAGTGATAGTGGTGGAGAAGTTATCAATGCAGATAATTTTCTAAGTGCTTGCAGCCAAGAACTTCTTGCTAGAGGAACTGAATTACTCAAGCGAACCCGCAAAGGTGATCTTCACTGGAAAATTGTTTCTGTTTATATACATCGAACCGGCCAGGTGATGCTGAAAATGAAAAGTAGACATGTTGCAGgaacaataacaaaaaagaaaaagaATGTTGTGTTGGATGTGTGCGCGAATTTACCGGCATGGCCAGGAAGGCATCTATTAGAGGATGGTGAAAAAAGAAGGTATTTTGGATTGAAGACAGAATCAAGAGGTTTAGTTGAATTTGAATGTAGAAATCAAAGAGAATATGAATTGTGGACTCAAGGTGTTTCAAGACTTCTCTCCATTGTTTCGCACAGAAAAAACAGAAATGGAATCTAG 1488 0.377 MEPKLTINCHRNEFQLPTTTNNGSSTRLPESPRIPMEFLSRSWSASAFEVSKALSPQPPPPPSTLPSNNKTSTNSIPEETITTLSQQFSTMCGNQFSFVSSATSQLVLERIMSQSTREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSDEFDDIVKFFRANNSIHPLFNGTRAMSTGIGNATPCSGPKTVGRWLKERREKKKEENRSHTAQVHAAISVAAVASALAAITAATAASSSAPNKDEKMAKTDMAVASAATLIAAQCVEAAEAMGAEREHLASVVSSAVNVRSHDDITTLTAAAATALRGAATLKARALKEMWNISAVTPLEKSIGIGICGGKANNNNNSSSSTSDSGGEVINADNFLSACSQELLARGTELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDVCANLPAWPGRHLLEDGEKRRYFGLKTESRGLVEFECRNQREYELWTQGVSRLLSIVSHRKNRNGI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02798 495 MobiDBLite consensus disorder prediction 114 152 - -
Tsu01g02798 495 Pfam Auxin canalisation 29 333 IPR008546 -
Tsu01g02798 495 PANTHER AUXIN CANALIZATION PROTEIN 1 494 - -
Tsu01g02798 495 MobiDBLite consensus disorder prediction 13 32 - -
Tsu01g02798 495 Pfam Plant pleckstrin homology-like region 381 486 IPR013666 -
Tsu01g02798 495 MobiDBLite consensus disorder prediction 114 149 - -
Tsu01g02798 495 MobiDBLite consensus disorder prediction 13 29 - -
Tsu01g02798 495 MobiDBLite consensus disorder prediction 50 75 - -
Tsu01g02798 495 PANTHER EXPRESSED PROTEIN 1 494 IPR040269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02798 Tsu-Chr1 33318780 33323885 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02798 - - gmx:100782024 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02798 01 33318780 33323885 Tsu01g02798 01 33318780 33323885 ECH
Tsu07g03616 07 42331050 42333081 Tsu01g02798 01 33318780 33323885 PCT