Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02553 atggtCGGTATTTTTTCTTTGGTCACGGGAATGGCCGGACCTagcggatttggatcctctacAACTGCTGAACAGGTTACCGAAGGAATTGATGCTAGCAACCTCACTATAATTATCACAGGAGGAGCAAGTGGTATAGGGTTGGAGACGGCGCGAGTCTTGGCTCTTCGAAAGGCACATGTCATAATCGCCGCAAGAAACATGGAATCTGCAAAGGAAGCTAAACAACTTATACTAGAGGACAATGAATCCGCTCGAGTGGACACAATGAAGCTCGACCTTTGTTCAATAAAGTCTGTTAGATCATTTGTGGAAAACTTCCTTGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCCTTCCAATTAACACAAGATGGAATTGAGATGCAGTTTGCAACAAATCATCTTGGtcattttcttttgacaaacCTTTTACTTGACAAAATGAAACAAACTGCAAAATCAACTGGAATTGAGGGAAGAATCATAAATCTTTCATCCATTGCTCACACTTACACTTATGAAGAAGGCATTCGATTGGATAACATCAATGATCAAATCGGTTACTCTGACAAGAAGGCTTACGGACAATCCAAGTTAGCCAACATATTACACTCAAATGAGCTTTCTCGTCGCTTGAAGGAAGAAGGTGTCAATATCACAGCCAACTCGGTGCATCCAGGAGTAATAATGACTCCACTTATGAGGCACTCTTCTTTACTTATGAACTTCTTGAAGATGTTCACATTTTTCATATGGAAGAATGTCCCACAGGGAGCTGCAACAACATGCTATGTTGCTTTGCATCCAAGCTTGAAAGGGGTAACTGGAAAGTACTTTTTGGATTGTAATGAGTTTCAACCAAGTGCATTTGCATCAAATGGACTATTAGGAAGAAAACTTTGGGATTTTAGCAATAAGTtgatcaattcaatttcaaaagcTTGA 972 0.3776 MVGIFSLVTGMAGPSGFGSSTTAEQVTEGIDASNLTIIITGGASGIGLETARVLALRKAHVIIAARNMESAKEAKQLILEDNESARVDTMKLDLCSIKSVRSFVENFLALDLPLNILINNAGVMFCPFQLTQDGIEMQFATNHLGHFLLTNLLLDKMKQTAKSTGIEGRIINLSSIAHTYTYEEGIRLDNINDQIGYSDKKAYGQSKLANILHSNELSRRLKEEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFFIWKNVPQGAATTCYVALHPSLKGVTGKYFLDCNEFQPSAFASNGLLGRKLWDFSNKLINSISKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02553 323 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 319 - -
Tsu01g02553 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Tsu01g02553 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Tsu01g02553 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Tsu01g02553 323 Gene3D - 23 320 - -
Tsu01g02553 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Tsu01g02553 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Tsu01g02553 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Tsu01g02553 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Tsu01g02553 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Tsu01g02553 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Tsu01g02553 323 PANTHER RETINOL DEHYDROGENASE 3 319 - -
Tsu01g02553 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02553 Tsu-Chr1 28251739 28255867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02553 35 244 Miscellaneous Gene Families AT2G29340 26.291 1.53e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02553 K11153 - gmx:100807056 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02553 01 28251739 28255867 Tsu01g02553 01 28251739 28255867 ECH
Tsu07g03795 07 44218014 44225029 Tsu01g02553 01 28251739 28255867 PCT