Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02388 ATGAATCGAACACTTGTTGAGAGAGTTAGATGTATGCTCTCAGAAGCTAAGTTGCCTCAACATTATTGGGGTGAAGCACTGTACACGGCGGTGTATGTTTTTAATCTCACTCCTACTGTTGTTTTGAACAGTGAAGTTCCAGACAAAATTTGGTTTGGTAAGAATGTCAAGTATGATCATTTGAGAGTCTTTGGTTGTAAGGCTTTTGTGCATGTTCCAAAGGATGAAAGATCCAAGTTGGATGCAAAGTCAAAACAATGTATCTTCATCGGCTATGGGCAGGATGAGTTTGGTTACAAGTTTTATGATCCTATAGGGAAGAAACTTATCAGAAGCCGCGATGTTGTGTTCATGGAAGACCAAACTATTGAAGACATTGATAAGATGGAGAAGACTACACCCAAGAAAGATGTTAGTTTGTCTAATATTGATCCAGTTTGGTTGCCTGTTCATAATTTGGATACTATTGGTGGTGATGTTCAGAATGGTGAGCCACATGAGTATGTTGATGATCAACAACTTGGAGAAGAGGTATATATTCCAGCTGATAATGATGAGGAGAATGATATGTCACAGGATGAGAATCTTGGTGAAGCTCCAGAATCATCTCAAGTTCAACTTAGGAGGTCCAACAGACAGAGAGAACCTTCTACAAGGTATAATTCTGATGAATATGTGACTTTGACTGATGAGGGTGAACCTGAGTATTTTCAAGAAGCCATGGAAAGTGATGAAAATCAAAAGTGGTTGGATGCAATGAATGATGAGATGAAATCCTTGCATGATAATCACACTTATGATTTAGTGAAGTTGCCTAAAGGCAAAAGGGCTTTGGAAAATAGGTGGATATATAGAGTCAAACATGAGAGTAACTTAGAGTCTCCAAGGTATAAAGCCAGATTGGTGGTGAAAGGTTTCCGTCAAAGAAAGGGTGTTGATTTTAATGAGATTTTCTCACCTGTTGTGAAGATGTCATCAATTAGAACCGTGTTGGGTTTGGCAGCTACTCTTGATCTAGAGGTTGagcaaatggatgtgaaaacgGCTTTCCTtcatggtgatttggaggaagaGATCTACATGAAGCAACCCGATGGTTTTCAAGTCAAAGGCAAAGAAGACTATGTGTGTAGATTGAGAAAGAGCctatatgggttgaagcaagCTCTAAGGCAGTGGTACAAGAAGTTTGAGTCTGTTATGTATGAACAAGGATACAAGAAGACTACTTCAGATCATTGCGtctttgttagaaaattttctaacaatGACTTCATTATCCTGttgttatatgttgatgatatgcttATTGTAGGGAAAAATATTTCTAACATTGACAGGTTAAAGAAGCAGTTGGGCGAGTCATTTGCCATGAAAGACATGGGAGCAGCTAAACAGATTCTTGGCATAAGAATCATGCGTGAcagaaaggagaagaaactttggatgtCACAAGAACACTTTATCAAAAGAGTGCTGCAGAGATTCCAGATGGAAAATTCTAAGGCGGTAAGCACTACTCTTGCTACTCATTTCAAGCTGAGTTCGAAACAAAGTCCTTCAAATGAAGATGAAACATTTGATATGAAACGTGTTCCTTATGCGTCTGCTGTGGGTAGTTTGATGTATGCAATGGTGTGTACAAGACCAGATATAGCACATGTCGTTGGTACAGTCAGTAGATTTTTGTCAAATCCAGGTAGAGAGCATTGGAATGCTGTAAAATGGGTTTTAAGGTATCTTCGTGGTACTACTTGTATGAGACTTTGCTTTGGGGGAGATAAGCCTACTTTGGAAGGGTACTCTGACTCAGATATGGCTGGCGACATTGATTCCAGAAAATCTACTTCGGGCTACATGATTAAGTTTGCAGGGGGAGCTGTAGCTTGGCAGTCCAGATTGCAAAATGAAGAGCTAGTGCCAGAGGATGTAAGGGAAGGATATTTTGCTGTTGTTGCAATGAAGGATGGAGAAATTAAAAGGTTTATTATTGGGTTAGAGTACTTGAGTGATCCTGAATTTTTGGGACTACTTGATCAAGCTCAGGAGGAGTATGGTTTCATGCACAAAGGAGCTATTGCTGTCCCTTGTCAGCCTCAACAATTACAGAACATTATAGATGGTCATAGATGA 2133 0.3732 MNRTLVERVRCMLSEAKLPQHYWGEALYTAVYVFNLTPTVVLNSEVPDKIWFGKNVKYDHLRVFGCKAFVHVPKDERSKLDAKSKQCIFIGYGQDEFGYKFYDPIGKKLIRSRDVVFMEDQTIEDIDKMEKTTPKKDVSLSNIDPVWLPVHNLDTIGGDVQNGEPHEYVDDQQLGEEVYIPADNDEENDMSQDENLGEAPESSQVQLRRSNRQREPSTRYNSDEYVTLTDEGEPEYFQEAMESDENQKWLDAMNDEMKSLHDNHTYDLVKLPKGKRALENRWIYRVKHESNLESPRYKARLVVKGFRQRKGVDFNEIFSPVVKMSSIRTVLGLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFQVKGKEDYVCRLRKSLYGLKQALRQWYKKFESVMYEQGYKKTTSDHCVFVRKFSNNDFIILLLYVDDMLIVGKNISNIDRLKKQLGESFAMKDMGAAKQILGIRIMRDRKEKKLWMSQEHFIKRVLQRFQMENSKAVSTTLATHFKLSSKQSPSNEDETFDMKRVPYASAVGSLMYAMVCTRPDIAHVVGTVSRFLSNPGREHWNAVKWVLRYLRGTTCMRLCFGGDKPTLEGYSDSDMAGDIDSRKSTSGYMIKFAGGAVAWQSRLQNEELVPEDVREGYFAVVAMKDGEIKRFIIGLEYLSDPEFLGLLDQAQEEYGFMHKGAIAVPCQPQQLQNIIDGHR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02388 710 PANTHER - 3 592 - -
Tsu01g02388 710 MobiDBLite consensus disorder prediction 195 211 - -
Tsu01g02388 710 SUPERFAMILY DNA/RNA polymerases 263 630 IPR043502 -
Tsu01g02388 710 SUPERFAMILY Ribonuclease H-like 1 64 IPR012337 -
Tsu01g02388 710 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 263 506 IPR013103 -
Tsu01g02388 710 MobiDBLite consensus disorder prediction 185 224 - -
Tsu01g02388 710 Pfam Auxin responsive protein 638 706 IPR003676 GO:0009733
Tsu01g02388 710 Gene3D - 1 72 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02388 Tsu-Chr1 25663514 25668502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02388 226 675 Receptor kinase-like Gene Family AT4G23160 32.680 1.22e-73 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02388 - - han:110894446 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04283 07 48285105 48292265 Tsu01g02388 01 25663514 25668502 PCT