Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02344 ATGtttaagaaaattatgaaaGGAGGGTCCAAAAAGCCCTCCAAATCGGATGCCAGTGATCCTCCTCCATCCGGGAACAACCGTAATTCAACTGCGCCGGTTGTTGTTAACCATGCCTCACGTGGCGGTGCCGGAGGAACTTCTGGTGTTAATTCCGCTACTGTGATGCCTATGACTTTAGCTTCCGGTACAATGGAACCGGTTCCTTCGTTCAAAGACGTACCAGTTGCCGAGAGGCAAAATCTCTTCCTCAGAAAGCTTAATATATGTTGTTTCTCGCTTGATTTCACTGATACGCTGAAGAACGTTAGGGAGAAAGAGATCAAGAGGCAAGCTTTGATGGAGCTAGTGGAGTTTATCCAATCAGGTTCCGGTAAAATGTCGGAGGATTGTCAGGAACAGATGATTAAAATGATATCTATCAATGTTTTCCGGTGCTTGCCTCCGGCGTCTCATGAGAACACCGGGACAGAGCCTACTGATCCTGAAGAGGAGGAGCCTTGCTTGGAGCCAGCTTGGCCTCACTTGCAGCTTGTTTATGAGCTTCTTCTTAGATATGTGGTTTCTTCTGATACTGATACAAAGGTTGCAAAACGGTACATTGATCATTCCTTTGTGCTAAAGttgcttgatttatttgattCTGAAGACCCGCGTGAGCGTGAGTATTTGAAAACCATTCTGCATCGTATATATGGAAAATTCATGGTTCATAGACCATTTATTAGAAAAGcaattaacaatattttttatcggTTTATATATGAAACTGAGAGACACTGTGGTATTGGTGAGCTTTTGGAGATTCTTGGTAGTATTATTAATGGGTTTGCTTTGCCCATGAAAGAGGAGCATAAGTTGTTTCTTGTTAGAGCTCTTTTGCCTCTGCATAAACCGAAATTGGTTTCTATGTACCACCAGCAATTGTCTTACTGCATAACTCAGTTTGTGGAGAAGGATTTCAAGCTGGCTGATACTGTCATTAGGGGCTTGTTGAAGTATTGGCCTGTCACTAATTGCCAGAAGGAAGTTCTCTTCCTTGGAGAACTTGAGGAAGTGTTGGAGGCTACACAGGCTGCAGAATTCCAACGCTGCATGGTTCAACTTTTCAAACAGATTTCCCGCTGCCTCAATAGTCCTCACTTTCAGGTTGCAGAGCGAGCCCTCTTTTTGTGGAATAATGAGCATATTGTAAGCTTAATTGCTCAAAACAGGACTGTGATATTACCGATAATATTTGAATCATTTGAGAGAAATATTGAGTGTCACTGGAACCAGGCAGTTCATGGGCTGACTGTGAATGTTCGCAAAATGTTTATTGAAATGGATGCAGAATTATTTGAAGAGTGCCAGAGGAATTACGCAGAGAAGCTGGCAAAAGCCGAAGAAGAGGCAGAACGGCGGGAATTGAACTGGAAGAGGCTTGCAGAAGCGGCTGCACAGAATGGGGCGGCGGATATGGTCACAGATTAG 1473 0.4257 MFKKIMKGGSKKPSKSDASDPPPSGNNRNSTAPVVVNHASRGGAGGTSGVNSATVMPMTLASGTMEPVPSFKDVPVAERQNLFLRKLNICCFSLDFTDTLKNVREKEIKRQALMELVEFIQSGSGKMSEDCQEQMIKMISINVFRCLPPASHENTGTEPTDPEEEEPCLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHCGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKLVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVQLFKQISRCLNSPHFQVAERALFLWNNEHIVSLIAQNRTVILPIIFESFERNIECHWNQAVHGLTVNVRKMFIEMDAELFEECQRNYAEKLAKAEEEAERRELNWKRLAEAAAQNGAADMVTD 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02344 490 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 483 IPR002554 GO:0000159|GO:0007165|GO:0019888
Tsu01g02344 490 MobiDBLite consensus disorder prediction 17 36 - -
Tsu01g02344 490 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 69 479 IPR002554 GO:0000159|GO:0007165|GO:0019888
Tsu01g02344 490 Gene3D - 75 478 IPR011989 -
Tsu01g02344 490 MobiDBLite consensus disorder prediction 1 50 - -
Tsu01g02344 490 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 483 - -
Tsu01g02344 490 Coils Coil 444 478 - -
Tsu01g02344 490 PIRSF PP2A_B56 5 490 IPR002554 GO:0000159|GO:0007165|GO:0019888
Tsu01g02344 490 SUPERFAMILY ARM repeat 80 457 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02344 Tsu-Chr1 25174921 25180651 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02344 K11584 - gmx:100795277 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02344 01 25174921 25180651 Tsu01g02344 01 25174921 25180651 ECH
Tsu07g03914 07 45281884 45292649 Tsu01g02344 01 25174921 25180651 PCT