Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02314 ATGTCACCTGGAATGGCAATATTTAGTGAACAGAATCAACAGATAAAAGGTGATTATGATACATCAGAAAATCAATATGAGAAAGGAGTGAAGCAACTAGTTGATAATGGACTTCACAAGGTACCTAAAAAATACATACTTCCTCCTTCAGAACGTCCTACAATCAATAATGAAGATTCAAATGTTGCCAAACAAAAACTTGAGCTACCAATCATTGATTTTTCTGATTTGAATGGTCCAAATAGGCCCCAAGTCCTTCAATCATTAGCCAATGCTTGTGAACTGTACGGATTTTTTCAGGTGGTAAACCATGGGATCACAGAAGATGTTATAAACAACATGATGGATGTGAGTGGAAGATTTTTTGATCTTCCAATTGAAGAAAGAGGCAAATACATGACATCAGATATGAGAGCAGTAGTTCGATATGGAACAAGCTTTAGTCAAACAAAAGACAAAGTGTTTTGTTGGAGAGACTTCTTGAAACTCCTCTGCCATCCTTTGCCTAATTATCTTCCTCACTGGCCTGATTCTCCCGTTGACTTTAGGAAAATGGCGGCTACCTACGCAGAAGAAACCAAAAACTTATTTCTAAGGATAATGGAAGCCATATTAGAGAGTTTAGGTATAATTGAAGATAACCAAGAAGAAAATGACAATAATATTCTCAAAGAATTGGAAGATGGGAGCCAGCTTATGGCAGTGAATTTCTACCCACCATGTCCTCAACCAGACCTAACCCTAGGGATGCCTCCTCATTCTGACTATGGATTCCTCACACTCCTTCTTCAAGATGAGGTAGAGGGTTTGCAAATCCAATACCAAGGGAAATGGTTCATGGTTCAACCTATTAATAATGCTTTTGTTGTTAATGTTGGTGATCACCTTGAGATTTTTAGCAACGGAAAGTACAAGAGTGTGCTACATAGGGTTCTAGTGAATTCATGTAAGCGTAGAAGATCCGTTGCTTCATTGCATAGCGTTTCGTTCAACAGTACAGTGAAACCGTCACCTAAACTTATTGACAAAACCAATCCCAAACGTTACGCAGACACCGATTTTGAAACTTTTCTTGCTTACATTTCTACCAATGAGACCAAAACAAAGAGTTTTCTGGAGTCTAGAAGATTGAGTTATATTCTACATGACtag 1152 0.3793 MSPGMAIFSEQNQQIKGDYDTSENQYEKGVKQLVDNGLHKVPKKYILPPSERPTINNEDSNVAKQKLELPIIDFSDLNGPNRPQVLQSLANACELYGFFQVVNHGITEDVINNMMDVSGRFFDLPIEERGKYMTSDMRAVVRYGTSFSQTKDKVFCWRDFLKLLCHPLPNYLPHWPDSPVDFRKMAATYAEETKNLFLRIMEAILESLGIIEDNQEENDNNILKELEDGSQLMAVNFYPPCPQPDLTLGMPPHSDYGFLTLLLQDEVEGLQIQYQGKWFMVQPINNAFVVNVGDHLEIFSNGKYKSVLHRVLVNSCKRRRSVASLHSVSFNSTVKPSPKLIDKTNPKRYADTDFETFLAYISTNETKTKSFLESRRLSYILHD 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02314 383 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 228 328 IPR005123 -
Tsu01g02314 383 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE PROTEIN 22 377 - -
Tsu01g02314 383 Pfam 2OG-Fe(II) oxygenase superfamily 231 326 IPR044861 -
Tsu01g02314 383 Pfam non-haem dioxygenase in morphine synthesis N-terminal 69 168 IPR026992 -
Tsu01g02314 383 Gene3D - 21 360 IPR027443 -
Tsu01g02314 383 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 22 377 - -
Tsu01g02314 383 SUPERFAMILY Clavaminate synthase-like 28 363 - -
Tsu01g02314 383 PRINTS Isopenicillin N synthase signature 89 106 - -
Tsu01g02314 383 PRINTS Isopenicillin N synthase signature 253 274 - -
Tsu01g02314 383 PRINTS Isopenicillin N synthase signature 288 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02314 Tsu-Chr1 24679461 24682647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02314 27 357 Glycosyltransferase AT5G59530 35.588 1.20e-55 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02314 - - gmx:100805175 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03941 07 45521190 45524223 Tsu01g02314 01 24679461 24682647 PCT