Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01998 ATGCTTACCGTGGTGCGTGTGCACCTTCCTTCTGATATTCCCATTGTTGGTTGTGAACTTACTCCTTATGTTCTTCTTCGTCGTTTTGATGCAACTGTTACTACCGATGATGTTCTTGAAACTTCTCCTTTAGATGGCCATTTCTTGCGCTACAAgtgGTATCGTGTACATAGTGATAAAAATGTTGCTGTATGTAGCATACATCCATCTGAGACGGCCACAATACAGTGTGTAGGTTGTACTAAGGCCAGAGTACCCATTCCTAAAAGTTACCACTGCACCTCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGCCTTGCATGATCGTGCTGCAAATGCGGTTAATGAAAATGGAAATGAGGAGGATGAGGTATTTGGGCGCTTTAATAGTTCTGTATCTTCCTCTGCATCAAGTGCTAGCTTGACGAATGGGTATGCCGCTCCTATGTATCCAGCATCTATAAAAAATGGCAGTGAAACTTGGTTCGAAGTTGGACGATCTAAGACTTATACCCCGACTGCTGATGACATCGGTCATGTCCTTAAGTTTGAATGTTCTGTAGTTGACGCAGTGACAAAGTTACCTGTGGGACAAGTTAACACTTTACTAACTAATCGGGTCATAACTGCTCCGTCACCTGTTCCGCGCCGAGTGATACGTGTTGATGGGATGGGACATTTAGATCTAGATAGGCGTATGACATCTTTGGGAACTTTTACTGTTATGTCATACAATGTTTTGTCTGAGACATGTGCCTCAAATGAACTGTATAATTACTGCCCTCCATGGGCACTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGGGAAATTGTTGGTTACTGTGCAGACATTATTTGCCTTCAAGAGGTTCAAAATGACCATTATGAGGAATTTTTTGCTCCTGAATTGGACAAACATGGCTATAATGGTCTTTTCAAGAGAAAAACAACTGAGGTATCCAGTGGCAATACAATTGATGGTTGTGCCACATTTTTCCGCAGAGACAGATTTTCCCATGTGAAGAAATATGAGGTTGAGTTCAATAAGGCTGCACAGTCTTTAACCGATGCCATGATTCCTACCATTCAGAAGAAAACTGCCTTGAATCGACTGGTCAAGGATAATGTTGCACTAATAGTGGTTCTAGAAACAAAAGTTAACAACCAACCAGTTGATAATCTCGGGAAAAGGCAACTTCTTTGTGTGGCAAATACACATGTACATGTCCAGCAAGATTTAAAAGATGTCAAACTGTGGCAGGTGCATACTCTCTTAAAAGGGTTGGAGAAAATAGCTCAATCTGCAGACATTCCAATGTTGGTTTGTGGAGATTTTAATTCCGTTCCAGGAAGTGCTCCTCATTCACTTCTTGCAATGGGGAAGGTAGACCCATCACATCCTGATTTAACAGTTGACCCACTTAATATTTTACGCCCTCATAGCAAGTTGGTTCATCAGTTGCCACTGGTCAGTGCATACTCGTCTTTTGCAAGAACAGCAGGTCTTCCATTTGAGCAGCATAAAAGGAGACTGGATGGCGGAACAAATGAACCTTTATTCACAAGCGTCACTAGAGATTTTGTTGGCACTCTAGACTACATATTTTACACAGCGGATTCATTGGTTGTGGATTCATTATTGGAGTTATTGGATGAGGAAAGTTTGAGGAAGGACACTGCACTTCCTTCACCTGGATGGTCCTCAGATCATATAGCTCTCTTAGCTGGGTTTCGCTGCTGCAAGAGTAAGTCTAGGCATTGA 1770 0.4203 MLTVVRVHLPSDIPIVGCELTPYVLLRRFDATVTTDDVLETSPLDGHFLRYKWYRVHSDKNVAVCSIHPSETATIQCVGCTKARVPIPKSYHCTSKCFSDAWQHHRALHDRAANAVNENGNEEDEVFGRFNSSVSSSASSASLTNGYAAPMYPASIKNGSETWFEVGRSKTYTPTADDIGHVLKFECSVVDAVTKLPVGQVNTLLTNRVITAPSPVPRRVIRVDGMGHLDLDRRMTSLGTFTVMSYNVLSETCASNELYNYCPPWALSWPYRRQNLLREIVGYCADIICLQEVQNDHYEEFFAPELDKHGYNGLFKRKTTEVSSGNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMIPTIQKKTALNRLVKDNVALIVVLETKVNNQPVDNLGKRQLLCVANTHVHVQQDLKDVKLWQVHTLLKGLEKIAQSADIPMLVCGDFNSVPGSAPHSLLAMGKVDPSHPDLTVDPLNILRPHSKLVHQLPLVSAYSSFARTAGLPFEQHKRRLDGGTNEPLFTSVTRDFVGTLDYIFYTADSLVVDSLLELLDEESLRKDTALPSPGWSSDHIALLAGFRCCKSKSRH 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01998 589 CDD Deadenylase_CCR4 243 582 - -
Tsu01g01998 589 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 36 586 - -
Tsu01g01998 589 Pfam Endonuclease/Exonuclease/phosphatase family 244 573 IPR005135 GO:0003824
Tsu01g01998 589 Gene3D Endonuclease/exonuclease/phosphatase 207 588 IPR036691 -
Tsu01g01998 589 SUPERFAMILY DNase I-like 239 583 IPR036691 -
Tsu01g01998 589 PANTHER CARBON CATABOLITE REPRESSOR-LIKE PROTEIN 36 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01998 Tsu-Chr1 20361341 20367484 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01998 K12603 - gmx:100819402 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01998 01 20361341 20367484 Tsu01g01998 01 20361341 20367484 ECH
Tsu07g04168 07 47370616 47377540 Tsu01g01998 01 20361341 20367484 PCT