Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00701 ATGAGAACAAAAATCTGGAATCTTCTCTCCAATAACAAAAACTCTAACAAACTCATCCAATTCGCATTCTCGATCCCAACCTCCAACTTCCGTTCTTACTGCACCGATCCATCACGCATTCTCAACCATAACCGTCCAGGACCGCTTCTGCAGTACAAAAACCTTGTTAATCAAGGGAAGTTGCAACATGATCCTTACCAAGAAACTGTTGCTATTGAGCTTCAGAATTTGTTAGCAAGGTTGGACAATTATGAACGACAAATGGAAGAGTATcatGTTAATTTATCTAAATGGGAGAAGAATAGGGAGGACGAGCGGCGGAAGATTCTTATGGAGGAAGTTGAGAAGCAGCAGAATGACGAGGATTGGTGGAAGCGTTTGAACAATAAAATCACTGAAAGATGGACGACAAACTCTAGGAAAAGGCCAGATAATGTGGATCCAGGGGTAGGAAAATGGGTATCGTATCTTAAACGTGAGAAGAAGTTGGATTCACTAGTTGGTCGCCGACCAACTGCTCCTCCAGCTCCCAAAGGACTTTACATATATGGCAATGTGGGCAGTGGGAAGACAATGCTGATGGACATGTTTTATAGTGCCACGGAAGGAATAGTTAAACATCGAAGAAGGTATCACTTTCACGAGGCCATGCTTAGAATAAATGAACATATGCACAAGATATGGAAGAAACAAATGGAAGAGAAGCCTTTGCAGTCAGGCATTGCTGGTTGGATTATGAATCTTCCCTTTGACACTAAAGCTAAGGAGTGGTTAGCTGCAGAAGAAAAATACAAGCAAGAGGTACAGCTGAAAAACATTCTTCCAGCAGTAGCAGATAAATTTTTTCTGGATAGAGAAGGGGACGAAAAGGGAGCTAGCATTTTGTGCTTTGATGAGATACAGACTGTTGATGTATTTGCTATTGTGGCTTTATCTGGAATTCTAAGCAGATTGTTGAGTAGTGGAACTATTATTGTGGCTACGAGTAATCGAGCACCAAAGGATTTGAATGAGGCTGGTATGGTACCAGAATTCTTCCAAAAACTTCTCTCTAATTTGGAAGAACATTGTGAGAAGGTGTTGGTAGGCAGTGAAATTGACTACCGTCGTTTTATTGCACAAAGATCAGTAAACCGGGTAAACTACTTGTGGCCTATTGAAAAGGAAACAATCAATGAATTTGAGAAAAAGTGGCACAATGCAACAGGCACATTTGGAGGAAAAATAATCCCCGACACCATCTCGGTGATGTTTGGAAGGACACTTGAGGTTCCTGAAAGCTGTGGGGGAGTTGCCCGCTTCACATTTGACTATCTCTGTGGTCGTCCGTTGGGCGCAGCAGATTATATTGCAGTAGCGGAAAACTATCATACTGTTTTCATATCTGATATTCCAGTGATGAGTATGCGCATTCGTGACAAGGCACGAAGATTTATCACTCTTATTGACGAGTTATATAATCATCATTCTTGTCTATGTTGCTTGGCATCCTCTTCAATTGATGATTTATTTCAAGGAACTGAGGAGGGCACACTTTTTGACTTGGAGAGTTTCCAGTTTGAAACAGAGGCTGAAGGTGGGAAACTTCGCCGGGATGTCTTAGCAGAAGGCAGGGTAGGCTCAGGAGGTACCCCTGTTGGCATCACATCCATACTATCTGGTCAGGAAGAGCTGTTTACTTTTCAGAGAGCTGTCTCGCGCCTGATTGAAATGCAAACTCCATTATACTTGGATGGAATCACTTACTGTCTGAGTCATCATCAATTTGAAAATATTCAGGCAATGAATTACTTATTATCAGCAATAAGCACAAGGTCTCAATGGGGTCATCATGAACAAGAACAAGTGTACCCTATTGGTGGTTTATTTGCAAGCATGAGTCAAAATTCAATGGGAATGGGTTTTGGTAGTGGAATTCCACAAACAAACTCAtctgattcttcatcttctaagaGAAACAATGGGATGAAGATTCCTTGCACTGAGTTGTACATTAGGTATGTACAATCAGAAGGGAAAGTTAAGATTCATGGTGTTCCTGATgaagatgaggaagatgaaATGGTGGAAGGTgttaagagaaagaaaaaggatAATCTTAAAAAGTTCAAGATTAAGGTAAAAAACCCTTCTTTAAGGAGGTTGATTAGTGGTGCTTTTGCTGGTGCTATTTCACGTACTGCTGTTGCACCTTTGGAAACTATTAGGACTCATTTGATGGTTGGAAGTAGTGGTCATTCTACTGGTGAGGTTTTTAAGAATATCATGGAGTCTGATGGATGGAAAGGATTGTTTAGGGGTAATTTTGTTAATGTCATAAGGGTTGCACCCAGTAAGGCTATTGAGCTATTTGCTTATGATACAGTTAACAAGAACCTCTCATCAAAGCCTGGTGAAAAGCCTAAACTCCCAGTTCCTGCGTCATTGATCGCAGGTGCTTGTGCAGGAGTTAGTTCAACTATTTGCACATATCCGCTAGAATTACTCAAAACTAGATTAACTATCCAGAGAGACGTCTATAACGGTCTATTTGATGCGTTTGTGAAAATCATTCGAGATGAGGGTGCTTCAGAACTTTACAGAGGCCTTGCTCCTAGTCTCATTGGAGTTATTCCATATTCTGCCACCAATTACTTTGCCTATGACACTTTAAGGAAAGTGTACAAGAAAGTTTTTAAACAAGAGAAGATCGGAAACATCGAGACCCTTTTGATAGGATCTGCGGCCGGTGCTATTTCAAGTACCGCTACTTTCCCGCTTGAAGTGGCTCGCAAGCAAATGCAAGTTGGAGCACTTAGTGGAAGACAAGTTTACAAGAATGTGATTCATGCACTTGCATGCATACTTGAGAAGGAAGGTGTCCAAGGTTTGTATAGAGGATTAGGACCAAGCTGCATGAAGTTGGTTCCAGCTGCAGGAATCTCTTTCATGTGCTATGAAGCATGCAAGAGGATATTGGtagaggaagatgatgatgataatgaggaATAG 2991 0.4015 MRTKIWNLLSNNKNSNKLIQFAFSIPTSNFRSYCTDPSRILNHNRPGPLLQYKNLVNQGKLQHDPYQETVAIELQNLLARLDNYERQMEEYHVNLSKWEKNREDERRKILMEEVEKQQNDEDWWKRLNNKITERWTTNSRKRPDNVDPGVGKWVSYLKREKKLDSLVGRRPTAPPAPKGLYIYGNVGSGKTMLMDMFYSATEGIVKHRRRYHFHEAMLRINEHMHKIWKKQMEEKPLQSGIAGWIMNLPFDTKAKEWLAAEEKYKQEVQLKNILPAVADKFFLDREGDEKGASILCFDEIQTVDVFAIVALSGILSRLLSSGTIIVATSNRAPKDLNEAGMVPEFFQKLLSNLEEHCEKVLVGSEIDYRRFIAQRSVNRVNYLWPIEKETINEFEKKWHNATGTFGGKIIPDTISVMFGRTLEVPESCGGVARFTFDYLCGRPLGAADYIAVAENYHTVFISDIPVMSMRIRDKARRFITLIDELYNHHSCLCCLASSSIDDLFQGTEEGTLFDLESFQFETEAEGGKLRRDVLAEGRVGSGGTPVGITSILSGQEELFTFQRAVSRLIEMQTPLYLDGITYCLSHHQFENIQAMNYLLSAISTRSQWGHHEQEQVYPIGGLFASMSQNSMGMGFGSGIPQTNSSDSSSSKRNNGMKIPCTELYIRYVQSEGKVKIHGVPDEDEEDEMVEGVKRKKKDNLKKFKIKVKNPSLRRLISGAFAGAISRTAVAPLETIRTHLMVGSSGHSTGEVFKNIMESDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSSKPGEKPKLPVPASLIAGACAGVSSTICTYPLELLKTRLTIQRDVYNGLFDAFVKIIRDEGASELYRGLAPSLIGVIPYSATNYFAYDTLRKVYKKVFKQEKIGNIETLLIGSAAGAISSTATFPLEVARKQMQVGALSGRQVYKNVIHALACILEKEGVQGLYRGLGPSCMKLVPAAGISFMCYEACKRILVEEDDDDNEE 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00701 996 Gene3D - 168 370 IPR027417 -
Tsu01g00701 996 ProSiteProfiles Solute carrier (Solcar) repeat profile. 897 985 IPR018108 -
Tsu01g00701 996 PANTHER ATPASE N2B 42 594 IPR005654 GO:0005524|GO:0016887
Tsu01g00701 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 342 IPR027417 -
Tsu01g00701 996 Pfam AFG1-like ATPase 161 508 IPR005654 GO:0005524|GO:0016887
Tsu01g00701 996 PANTHER AFG1-LIKE ATPASE FAMILY PROTEIN 42 594 - -
Tsu01g00701 996 ProSiteProfiles Solute carrier (Solcar) repeat profile. 803 887 IPR018108 -
Tsu01g00701 996 Pfam Mitochondrial carrier protein 803 890 IPR018108 -
Tsu01g00701 996 Pfam Mitochondrial carrier protein 710 794 IPR018108 -
Tsu01g00701 996 Pfam Mitochondrial carrier protein 897 988 IPR018108 -
Tsu01g00701 996 SUPERFAMILY Mitochondrial carrier 710 981 IPR023395 -
Tsu01g00701 996 Gene3D Mitochondrial carrier domain 706 991 IPR023395 -
Tsu01g00701 996 PRINTS Mitochondrial carrier protein signature 714 727 IPR002067 GO:0055085
Tsu01g00701 996 PRINTS Mitochondrial carrier protein signature 860 878 IPR002067 GO:0055085
Tsu01g00701 996 PRINTS Mitochondrial carrier protein signature 727 741 IPR002067 GO:0055085
Tsu01g00701 996 PRINTS Mitochondrial carrier protein signature 767 787 IPR002067 GO:0055085
Tsu01g00701 996 PRINTS Mitochondrial carrier protein signature 818 836 IPR002067 GO:0055085
Tsu01g00701 996 PRINTS Mitochondrial carrier protein signature 906 928 IPR002067 GO:0055085
Tsu01g00701 996 ProSiteProfiles Solute carrier (Solcar) repeat profile. 709 792 IPR018108 -
Tsu01g00701 996 Coils Coil 67 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00701 Tsu-Chr1 6144416 6157120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00701 617 992 Organic Solute Cotransporters AT4G32400 63.660 3.87e-159 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00701 - - mtr:MTR_1g012370 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00701 01 6144416 6157120 Tsu01g00701 01 6144416 6157120 ECH
Tsu01g00701 01 6144416 6157120 Tsu07g00641 07 5069120 5073176 PCT