Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00686 ATGGCTTCCAACAAGCTTAGTGCACTAATTATATTGTTTTCTCTCCTTGCTTATTCAACATTCTCTCATGCTTGTGATACATGCAAACCACCTAAGCATAGCCCTCCACCACCTTCACCTTgtcctccaccaccaccatcaaaAACACCTAAGGCTAGTCCTCCACCACATTCAACAACACCTAGTGCTAGCCCTCCACCAAAGGCTAGTACTACACCTCCTTCAACAACTCCAAATGCTAGTCCTCCACCTAAGGCTAGTACCCCACCACCTTCAACCACACAAAAATGTCCAAGTGACACATTAAAGCTAGGTGTTTGTGCTGATGTTTTAGGACTTGTTAATATAGTTGTTGGATCTCCTGCTTCAAGCAAGTGTTGTGCATTGATTCAAGGTTTGGCTGATTTGGATGCAGCAGTTTGTCTTTGTACTGCTATTAAGGCTAATGTTCTTGGTATCAACTTGAATGTTCCTGTCACACTAAGTCTCCTACTTAGTGCTTGTGAAAAATCTCTTCCTTCTGGTTTCCAATGTTCTTAG 540 0.4056 MASNKLSALIILFSLLAYSTFSHACDTCKPPKHSPPPPSPCPPPPPSKTPKASPPPHSTTPSASPPPKASTTPPSTTPNASPPPKASTPPPSTTQKCPSDTLKLGVCADVLGLVNIVVGSPASSKCCALIQGLADLDAAVCLCTAIKANVLGINLNVPVTLSLLLSACEKSLPSGFQCS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00686 179 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 100 178 IPR036312 -
Tsu01g00686 179 PANTHER PROLINE-RICH PROTEIN DC2.15 1 179 - -
Tsu01g00686 179 Pfam Hydrophobic seed protein 97 179 IPR027923 -
Tsu01g00686 179 Gene3D - 94 179 IPR036312 -
Tsu01g00686 179 SMART aai_6 97 178 IPR016140 -
Tsu01g00686 179 MobiDBLite consensus disorder prediction 29 97 - -
Tsu01g00686 179 PANTHER - 1 179 - -
Tsu01g00686 179 MobiDBLite consensus disorder prediction 30 91 - -
Tsu01g00686 179 PRINTS Proline rich extensin signature 45 66 - -
Tsu01g00686 179 PRINTS Proline rich extensin signature 67 83 - -
Tsu01g00686 179 PRINTS Proline rich extensin signature 33 45 - -
Tsu01g00686 179 CDD HPS_like 94 178 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00686 Tsu-Chr1 6032212 6032751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00686 90 178 Acyl Lipid Metabolism Gene Families AT4G22490 37.363 1.02e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00686 - - mtr:MTR_1g012710 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00686 01 6032212 6032751 Tsu01g00686 01 6032212 6032751 ECH
Tsu01g00686 01 6032212 6032751 Tsu07g00667 07 5316905 5317799 PCT