Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05189 ATGTCTGTTTCTTCTAATCTTGTTACAAATTCAAAGAATCTTTTACCTCAGGATGACACTTCATGTGAAAAAATCTTCAAACCAAGTTTCAATATGAAATATAGAGTCAACACTTTGCATACTAGTGGTTCAGTTGTGGAACAATCTGAAAGAGATGTTGTTGAAGATTTTGTTTGGTTGAAGATGCAAGAAGAAGCTAAAATTGATGTCACTGTTGAACCAATATTGTCTAGTTACTATCATGTTTCAATCTTGTCTCAAAAATCATTGGAAACTGCTTTGGCCAATCATCTTGCAGTCAAACTAAGCAGTTTAAGGAAAGAGATCCTGCTTAATCGTGTTTCGGAAGTTTTTGGAGTTGATATTCATCCGGGAGCTAAGATCGGAAGTGGGATTTTGTTCGATCACGCAACGGGGATTGTGGTTGGTGAAACAGCTGTTATTGGTAATGATGTTTCAATTTTGCACGGTGTGACGTTAGGAGGGACCGGTAAGGCTCATGGTGATAGGCATCCGAAGATTGGTGATGGGGTGTTGATAGGCGCCGGAACTTGTATTTTGGGGAATATTAAGATTGGTGATGGCGCAAAAATTGGTGCTGGTTCGGTCGTGATTAAGGACGTGCCTGCAAGGACTACGGTTGTTGGGAATCCGGCTAAATTGGTTGGAGGGAAGAACAATCCTATTAAACTTGATAAGATTCCTAGTCACACTATGGATCATATTGCACATATTTCTGAATTTTATGATTATGTTATCTAG 762 0.3911 MSVSSNLVTNSKNLLPQDDTSCEKIFKPSFNMKYRVNTLHTSGSVVEQSERDVVEDFVWLKMQEEAKIDVTVEPILSSYYHVSILSQKSLETALANHLAVKLSSLRKEILLNRVSEVFGVDIHPGAKIGSGILFDHATGIVVGETAVIGNDVSILHGVTLGGTGKAHGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVIKDVPARTTVVGNPAKLVGGKNNPIKLDKIPSHTMDHIAHISEFYDYVI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05189 253 SMART SATase_N_2_a 58 126 IPR010493 GO:0005737|GO:0006535|GO:0009001
Trre9g05189 253 Pfam Serine acetyltransferase, N-terminal 58 113 IPR010493 GO:0005737|GO:0006535|GO:0009001
Trre9g05189 253 FunFam Serine acetyltransferase 121 247 - -
Trre9g05189 253 CDD LbH_SAT 118 218 IPR045304 -
Trre9g05189 253 Pfam Bacterial transferase hexapeptide (six repeats) 171 205 IPR001451 -
Trre9g05189 253 PANTHER SERINE ACETYLTRANSFERASE 47 105 - -
Trre9g05189 253 Gene3D Hexapeptide repeat proteins 121 242 - -
Trre9g05189 253 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 180 208 IPR018357 GO:0016740
Trre9g05189 253 SUPERFAMILY Trimeric LpxA-like enzymes 56 222 IPR011004 -
Trre9g05189 253 Gene3D serine acetyltransferase, domain 1 43 120 IPR042122 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05189 Trre-Chr9 57069346 57070320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05189 80 252 Miscellaneous Gene Families AT2G17640 54.237 2.92e-53 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05189 K00640 - qsu:111986208 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05189 9 57069346 57070320 Trre9g05189 9 57069346 57070320 ECH
Trre5g01146 5 8118682 8119860 Trre9g05189 9 57069346 57070320 PCT