Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01146 ATGATTGTTCATGTTCTAGGTCGTACCCTCACTTCATCTTTATATAAGACTTCTCCTTTCACTCAAAATCCAATTCAATTCAAACCCATTTTTCTTCTCCCTTCAAAGTTTCAACCTTTAATCCCAATTCAACCTTTTTCTTCTTCTTCCATGGCTACTTGTATTGATTCTTCTTCCCCTCCTATTTCTCGTAAACCTAACGTTTCTCATCATCAATCTGATGATTACTTTGCTAAATTCTGTCGACCCACTTTCTCTGATCATGTTTCCTCTGTACCCATTTCAATGAATCATGAAAAAACCTTACATACAAAAACCATTGTAGATGATTTTGAACATGTTCATGTTAATGATGATGTTGAAAATGATGTTGGTGTTGATGTTGATTTGTGGTTGAAGATTCAAGAAGAAGCAAGGGTATCTGAAGTTTTTGCTGTTGATATTCATCCTGGTGCTAAGATTGGTAGAGGGATTTTGTTGGATCATGCAACAGGAGTTGTTGTTGGTGAAACTGCTGTTATTGGAAATAATGTTGCGATTTTGCATAATGTTACATTAGGTGGAACAGGTAAAATTTGTGGTGATAGACATCCAAAGATTGGTGATGGTGTTTTGATTGGTGCAGGAACATGTATTTTAGGGAATATTAAGATTGGTGATGGTGCTAAAATTGGTGCTGGTTCTGTTGTTTTGAAAGATGTTCCACCAAGAACTACTGCTGTTGGTAATCCAGCTAAGTTGATTGGTGGAAAAGATAATCCTATCATGTTGGATAAGGCTCCTAGCTTTACTATGGACCATACTTCATGGTCCGATTACGTTATCTAG 828 0.3647 MIVHVLGRTLTSSLYKTSPFTQNPIQFKPIFLLPSKFQPLIPIQPFSSSSMATCIDSSSPPISRKPNVSHHQSDDYFAKFCRPTFSDHVSSVPISMNHEKTLHTKTIVDDFEHVHVNDDVENDVGVDVDLWLKIQEEARVSEVFAVDIHPGAKIGRGILLDHATGVVVGETAVIGNNVAILHNVTLGGTGKICGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPAKLIGGKDNPIMLDKAPSFTMDHTSWSDYVI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01146 275 Gene3D Hexapeptide repeat proteins 147 263 - -
Trre5g01146 275 FunFam Serine acetyltransferase 147 273 - -
Trre5g01146 275 CDD LbH_SAT 144 244 IPR045304 -
Trre5g01146 275 SUPERFAMILY Trimeric LpxA-like enzymes 117 249 IPR011004 -
Trre5g01146 275 PANTHER SERINE ACETYLTRANSFERASE 137 274 - -
Trre5g01146 275 Pfam Bacterial transferase hexapeptide (six repeats) 197 231 IPR001451 -
Trre5g01146 275 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 206 234 IPR018357 GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01146 Trre-Chr5 8118682 8119860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01146 132 273 Miscellaneous Gene Families AT2G17640 59.859 6.47e-52 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01146 K00640 - cave:132174805 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01146 5 8118682 8119860 Trre5g01146 5 8118682 8119860 ECH
Trre5g01146 5 8118682 8119860 Trre9g05189 9 57069346 57070320 PCT