Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05158 ATGGACATATCAGATTACACAAGAATTGTATTTGATAAAATTCAGAAATTCGAGCCCGAGAGTGCTACAAAGATAATGGGCTATCTCCTTTTGCAAGACCATGGTGAACAAGAATTGGCTAGATTGGCTTCTTGTCCTGACCATATCATCGGTGAAGTTGTATTTAAGGCGAAAAATGATCTTCAAATGTTAGCTGTTAATCCAACCATGATGCCAATTTCACCACCTAATGTTAACCCTCAACAAGGTTTAAGCCATTTTCCGGGGTTATCTTCGTCTTCACCACCGAACTTTCAGCTTCCGTCTCCCTATTGGAATCAACAGTCTGCTGGTAATGCAAATCCTGAATATATGGGAATGAATTACATGGATTCTATCGCAGAACTTCAGAAACATACACAATTGTTGAGTTTGGAGAATCATTTAGATCATGTGAATATCGGAACTCGAGGCGTTGTTGTCAATGATTACAACAATGGCTTAGTTGATGCTTCTGCTATCAATTTCGGTGGAAAACCTACAAAAAGACTTTCACATTCAAACATGTCTGAATTTCCACTCAAGATCTGTCATTATTTCAGTAAAGGTTACTGTAGACATGGAAGTAACTGCAGATATTTTCATGGTCAAGCTCCTCATGATATGCATGGAAATAATGATAATACTAGTAATGAGGATCCGGTGATTTCGCCAGGGTCACTAGCTCAGATAGAGTCTGAAATTATTGAGCTTTTGAAGCAGAGAAGAGGTAATCCAATGTCAATTGCTTCACTGCCGATGGCATACTATGATAAGTATAAAAAGGTATTGCAAGCTCAAGGTTATTTAACCGAGAGCCAGAGACATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTCGTGCGACTCAATAGCATTCGGCTAATTGACAGGCCTCATGGACAGCATGCAGTAATACTGGCTGAAGATGCTCCGAAATACATTCAAAAGGGAGATTCTGTTCAAAATATCAGTGCTTCGCGACAGATATATTTGACTTTTCCAGCTGACAGCACTTTCACAGAAGAGGATGTTGCGAACTACTTCAATACATTTGGATTTGTTGAAGATGTTAGGATTCCATGTCAACAGAGAAGGATGTTTGGGTTTGTTACATTTGCTGATCCTGAAACCGTTAGAATGATTTTGGATAAGGGAAATCCCCATTATGTTCGTGGGTCTCGTGTGCTCGTGAAGCCTTACAGGGAGAAGACAAAGGTTGTCGAAAGGAGGTACCAAGATAGGATGGAGCACTCCATTTGCTGTCCTCATCACTTTGCAAATATTGACTCCGAACTTGACTCAATTCCAATAACTTTTGGGACCCATAGATCTCTAAGGAGACAGTGGATGGAAGAACAGGATGCTCTTGAATTGCAAAGGAGACGTCTTGCGCATGCGCAATTGCAGTTTACGCAAAGACCTTTGTCCATTTCACCTCAGTTTGGCTTCCCTATGGATGCATTAAGAGTTCCGGATGACCATTTCAATATCCAGTCTACCGAAGCTCTAAGTTATGCGATGAATAACAAAACCAAGAATGCCGACACTGATTCCTCTGAAGGGAATAGCAACGAAGGACTCAATCTCCCCGACAGTCCATTTGCATAG 1629 0.4088 MDISDYTRIVFDKIQKFEPESATKIMGYLLLQDHGEQELARLASCPDHIIGEVVFKAKNDLQMLAVNPTMMPISPPNVNPQQGLSHFPGLSSSSPPNFQLPSPYWNQQSAGNANPEYMGMNYMDSIAELQKHTQLLSLENHLDHVNIGTRGVVVNDYNNGLVDASAINFGGKPTKRLSHSNMSEFPLKICHYFSKGYCRHGSNCRYFHGQAPHDMHGNNDNTSNEDPVISPGSLAQIESEIIELLKQRRGNPMSIASLPMAYYDKYKKVLQAQGYLTESQRHGKSGYSLTKLLVRLNSIRLIDRPHGQHAVILAEDAPKYIQKGDSVQNISASRQIYLTFPADSTFTEEDVANYFNTFGFVEDVRIPCQQRRMFGFVTFADPETVRMILDKGNPHYVRGSRVLVKPYREKTKVVERRYQDRMEHSICCPHHFANIDSELDSIPITFGTHRSLRRQWMEEQDALELQRRRLAHAQLQFTQRPLSISPQFGFPMDALRVPDDHFNIQSTEALSYAMNNKTKNADTDSSEGNSNEGLNLPDSPFA 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05158 542 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 542 - -
Trre9g05158 542 SUPERFAMILY RNA-binding domain, RBD 345 423 IPR035979 GO:0003676
Trre9g05158 542 SUPERFAMILY CCCH zinc finger 187 209 IPR036855 GO:0046872
Trre9g05158 542 ProSiteProfiles OST-type HTH domain profile. 233 316 IPR025605 -
Trre9g05158 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 409 IPR000504 GO:0003723
Trre9g05158 542 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 341 412 - -
Trre9g05158 542 MobiDBLite consensus disorder prediction 518 536 - -
Trre9g05158 542 CDD RRM_AtC3H46_like 336 405 IPR034365 -
Trre9g05158 542 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
Trre9g05158 542 Gene3D - 334 413 IPR012677 -
Trre9g05158 542 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 210 IPR000571 GO:0046872
Trre9g05158 542 Pfam OST-HTH/LOTUS domain 233 310 IPR025605 -
Trre9g05158 542 SMART rrm1_1 335 405 IPR000504 GO:0003723
Trre9g05158 542 Gene3D - 179 264 - -
Trre9g05158 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 401 IPR000504 GO:0003723
Trre9g05158 542 MobiDBLite consensus disorder prediction 518 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05158 Trre-Chr9 56909202 56912304 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05158 - - gmx:100818984 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05158 9 56909202 56912304 Trre9g05158 9 56909202 56912304 ECH
Trre5g01193 5 8448914 8451188 Trre9g05158 9 56909202 56912304 PCT