Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01193 ATGGATATTTCTGAATGTACAAGGATTGTTTTTGACAAAATTCAACGATTTGAGCCGGAACATGCTACGAAGATCATTGGATATCTCCTTATGCAAGATAATGGTGAACAAGAGATAGCTAAATTAGCTTCATTTCCAGATCATTTGATCCATGATGTTGCCCATAATGCAAGAATTGAGCTTGAAAAGTTGGCTACTAGATCAGTAATCTCGTCCGGAAATCATTCGCCAGCAAGTTTCCAGGTTCATTCTCCCTATTACAATCTGCATAATGGAAATACTAATCCAGAATTTATGACATTAGGTATCAATGAACATCAAACTCGTACCGCATTATTCGGTTCGGAGAATCATCAACATGTAGATAGTGTAAATTCTACAACAGCTAACTTTGATTACTATAATTACTGCTTAGAATATGCTTCAGCTGTTGCCAATTTGAATCGAAAAAATGGTAGAAGGTTTTCAAACATGACTGAATTTCCATTCAAAACATGTCACTATTTCAGCAAAGGATATTGTAGGCATGGGAATAGTTGTAGGTTCTATCATCATGGACAAGCTGTTTCGGAGATATTCTCTCATATGTTTGGAAATGACGCTGCTGCTAATGACGAACAAGCGATTTCTCCTGGTTCACTGGCGCAACTAGAGTCGGAAATTGTAGAACTCTTGAAGCAAAGAGGAAATCCTATTTCAATTGCTTCACTGCCAATGGCATACTATGATAAGTATAAGAAGGTACTACAAGCTGAAGGGTACCTAGCCGAGAGTCAGCGGCATGGTAAGTCTGGCTACAATTTGACAAAGCTGCTTATTCGATTGAGAAACAGTATTCGACTAATTGACAGGCCTCATGGGCAGCATGCTGTGGTTTTAGCGGAAGATGCGCCGAAATTCATGGGAAAGGCAGATTGTCAAAATATTAGTGCGTCGCAACAAATTTACTTGACATTTCCAGCTGATAGCACTTTCTCAGAAGAGGATGTCTCAAACTACTTTAGCACTTTTGGGAATGTTGAAGATGTAAGGATTCCATGTCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTGATCCAGAAACTGTTAAAATGATTTTGGATAAGGGAAATCCTCACTATGTTCGCGGATCTCGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAACTTATTGACAGGAAGTATCCATATAGACTTGAGAATCATGTTTGTTATTCACCGCGATATGTAGACATCGATGCTGAAATCGCCTCAAGTCCAAGAAATTGTGGCAATCCTCGGTATCTAAGAAGGCTCCTCGAAGAGCAAGACCGAATCTTTGAACTAGAAAGAAGACGTCTTGCAGTGTTGCAAATATCCCAAAAATCTTTGTCTACTCCACCTCATTTCGGCATCAACATGAATGGATCAAGAATTTCAAATGATCATTTCAATGTCCAACCTACTGAATCTTTTAGTTATTTGCGCAACGATAGAGCTGAGTACACAAATGCCAATAACTCTGATGAAGAAAGCAACGAAGGACTAAATCTCCCAGACAGCCCATTTTCGTATCGAGTAGATGCCGGAATTTCAGCAATCATGTAG 1593 0.3923 MDISECTRIVFDKIQRFEPEHATKIIGYLLMQDNGEQEIAKLASFPDHLIHDVAHNARIELEKLATRSVISSGNHSPASFQVHSPYYNLHNGNTNPEFMTLGINEHQTRTALFGSENHQHVDSVNSTTANFDYYNYCLEYASAVANLNRKNGRRFSNMTEFPFKTCHYFSKGYCRHGNSCRFYHHGQAVSEIFSHMFGNDAAANDEQAISPGSLAQLESEIVELLKQRGNPISIASLPMAYYDKYKKVLQAEGYLAESQRHGKSGYNLTKLLIRLRNSIRLIDRPHGQHAVVLAEDAPKFMGKADCQNISASQQIYLTFPADSTFSEEDVSNYFSTFGNVEDVRIPCQQRRMFGFVTFVDPETVKMILDKGNPHYVRGSRVLVKPYKEKPKLIDRKYPYRLENHVCYSPRYVDIDAEIASSPRNCGNPRYLRRLLEEQDRIFELERRRLAVLQISQKSLSTPPHFGINMNGSRISNDHFNVQPTESFSYLRNDRAEYTNANNSDEESNEGLNLPDSPFSYRVDAGISAIM 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01193 530 Gene3D - 320 391 IPR012677 -
Trre5g01193 530 ProSiteProfiles OST-type HTH domain profile. 213 296 IPR025605 -
Trre5g01193 530 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 520 - -
Trre5g01193 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 380 IPR000504 GO:0003723
Trre5g01193 530 CDD RRM_AtC3H46_like 315 384 IPR034365 -
Trre5g01193 530 Pfam OST-HTH/LOTUS domain 213 290 IPR025605 -
Trre5g01193 530 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 320 391 - -
Trre5g01193 530 SMART rrm1_1 314 384 IPR000504 GO:0003723
Trre5g01193 530 SUPERFAMILY RNA-binding domain, RBD 324 402 IPR035979 GO:0003676
Trre5g01193 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 388 IPR000504 GO:0003723
Trre5g01193 530 ProSiteProfiles Zinc finger C3H1-type profile. 160 188 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01193 Trre-Chr5 8448914 8451188 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01193 - - gmx:100806206 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01193 5 8448914 8451188 Trre5g01193 5 8448914 8451188 ECH
Trre5g01193 5 8448914 8451188 Trre9g05158 9 56909202 56912304 PCT