Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05112 ATGGAATCTCCACAATCTATTGTGTCAGTGTCACCATTCAAGAACTCAGTCTTTGGAGATGGTGAGAAGTATAAGTCTAATATGTTAATACAAAGCCCTAGTCCTTTGTCTAAGGGCATTGAAATCAATGGAAAAGAAGCTTTTGCAGTGTCGAATCAAGAGGAATTCATTGGAGTAGTTGATGTTTACATACATCAAGCTAGAGACATTCATAACATCTGCATATACCATAAGCAAGATGTTTATGCTAAGATTTCTTTGACTAATGATCCTGAGAATTCTGTTTCTACCAAGATTATCAATGGCGGAGGAAGGAACCCCGTGTTTAACGATAACCTTCGTTTAAGCGTTAGGACAGTTGATTCTTCTCTCAAATGTGAGATTTGGATGCTGAGTAGGGTCAAGAATTATCTTGAAGACCAGTTGCTTGGTTTTGCTTTAGTACCTTTGTCTGATGTGTTGATGAAAGATGGAAAACTAGAGAAAGAGTTCTCTCTTTCTTCGACCGATCTATTCCATTCCCCGGCAGGTTTCGTTCAATTGTCTATTGCTTACAACGGTGCTTCGCCTGATGTTATGGCAATTTCGGCAATGCCTAATGCTGAGTTCGATAGAAATGGCATTCAGAAGGACTCTGAAACATGTGAGTCGATCGTGAGAGATTTAGGTAAAATTGAGTTCCCGGATCCCAAAATTGTAAATGAAGATCATATAATGGTTTCAGAATACTTTGGCACTGATAGCTTGGCCACTACTGATACCGAAAATCTTAGTTCCGAAAAAGGTGTTCAATTTGTGGAAAGCTTCTCAGCATGTAGTGCCGAATCTGTTGAACCGCCGAAGGTTGAATCTCCACCTACCAGTGTGTCAACAAATGACGTCGTTTCCTCTCCTTCATTGGCTGCAAGTTCAGAATCACGCGCTGCTACTAAATCTCCCATTCCGGAGCAAATTTCAGGCACAAAAGAGAAAACTGTTGATCTCAAAGATGGCGAGAGTGATTCATCGAACGCGTTGCTGAATGAGTCATTTCAAAAGCCTGTTGTGAGTGTGAGTATTGAGCCAGAGCCAAAGATGGTGCAGCAGGATATAGTAGACATGTACATGAAAAGTATGCAGCAATTTACTGAGTCATTAGCAAAAATGAAGCTTCCTATGGACTTTGAAAGTGGACCAACTAGTTCAGGAAACTCAATCTCGGAACCGAAACTACAGTCGTCAAAGAGTAGTAACTCGCGCGTGTTTTATGGTAGCAGAGCTTTCTTCTGA 1269 0.409 MESPQSIVSVSPFKNSVFGDGEKYKSNMLIQSPSPLSKGIEINGKEAFAVSNQEEFIGVVDVYIHQARDIHNICIYHKQDVYAKISLTNDPENSVSTKIINGGGRNPVFNDNLRLSVRTVDSSLKCEIWMLSRVKNYLEDQLLGFALVPLSDVLMKDGKLEKEFSLSSTDLFHSPAGFVQLSIAYNGASPDVMAISAMPNAEFDRNGIQKDSETCESIVRDLGKIEFPDPKIVNEDHIMVSEYFGTDSLATTDTENLSSEKGVQFVESFSACSAESVEPPKVESPPTSVSTNDVVSSPSLAASSESRAATKSPIPEQISGTKEKTVDLKDGESDSSNALLNESFQKPVVSVSIEPEPKMVQQDIVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSISEPKLQSSKSSNSRVFYGSRAFF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05112 422 SMART C2_3c 59 162 IPR000008 -
Trre9g05112 422 Pfam C2 domain 59 164 IPR000008 -
Trre9g05112 422 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 56 187 IPR035892 -
Trre9g05112 422 Gene3D C2 domain 53 202 IPR035892 -
Trre9g05112 422 MobiDBLite consensus disorder prediction 275 339 - -
Trre9g05112 422 MobiDBLite consensus disorder prediction 386 411 - -
Trre9g05112 422 MobiDBLite consensus disorder prediction 390 411 - -
Trre9g05112 422 MobiDBLite consensus disorder prediction 283 319 - -
Trre9g05112 422 ProSiteProfiles C2 domain profile. 42 164 IPR000008 -
Trre9g05112 422 PANTHER EXPRESSED PROTEIN 43 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05112 Trre-Chr9 56643008 56644276 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05112 - - gmx:100781587 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05112 9 56643008 56644276 Trre9g05112 9 56643008 56644276 ECH
Trre5g01201 5 8526591 8531542 Trre9g05112 9 56643008 56644276 PCT