Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05044 ATGGCTCCTATGGAAGAAAATGTTGTTGTCTCCAAGCTTGAGAAGTTGCTTAGCATGAAAGGAGGCAAAGGAGAGGCTAGCTATGCCAACAATTCCCAAGCACAGGCTATACATGCTAAGTCCATGATTCACTTTTTGAGAGAAACCCTAGATAATGTTAAGCTTGTTGGTGGAGGTGGTAATGACAAGGCTTTTGTGATTGCTGATTTGGGATGTTCATGTGGAAGCAACACCATTAATGTTGTTAATGTGATCATAAATCACATCATTAAGCGCTATGAAGCTTTAGGTTGCAACCCACCTGAATTTTCAGCCTTTTTTTCTGACCTTCCTAGCAATGACTTCAACACTCTTTTTCAACTCCTTCCTCCACTTGCAACCTATGGTGTTAGCATGGAAGAATGTTTAGCTAATGACAACCAAAGGTCCTACTTTGCTGCCGGAGTTCCCGGTTCGTTTTATCGGAGACTTTTTCCTACTAAGTCTGTTGATGTTTTTCACTCTGCCTTCTCTTTGCATTGGTTATCTAAGATACCAGAATCAGTATTGGACAAAAGGTCAATTGCATACAACAAAGGTAAGGTGTTTATCCATGGTGCTAGTGAAGCAACAGCCAATGCCTACAAGAGACAATTCAAAGCAGATTTAGCAGGCTTCTTGAGTGCAAGGTCAGTTGAAATGAAGAGAGAGGGGTCCATGTTCTTAGTTTGTTTGGGAAGAACTTCTGTGGACCCCACTGAACAAGGTGGGGCTGGTGTTCTTTTTGGGACCCATTTTCAGGATGCTTGGGATGACCTTGTCCAAGAGGGATTAATTAGCTCCACAAAAAGAGACAATTTCAACATTCCAGTGTATGCACCAAGCTTGCAAGACTTCAAGGAAGTAGTTGAAGAAAATGGTTCATTTGTGATAAACAAGCTTGAGGTATTCAAAGGAGGAAGTCCCCTTGTTTTGAAGAAACCAGATGATGCTAATGAAGTAGGAAGGGCTCTAGCCAATAGCTGCAGGACTGTATGTGGAGTCCTTGTTGATGCTCACATTGGTGATAAACTAAGTGAGGAACTCTTCCTTAGAGTTGAGCGCCGAGCCGCTAATCGTGCCAAGGAGCTTTTGGAGAAACTACAGTTCTTTCACATAGTTGCATCTCTTTCTTTTGCTCAATGA 1164 0.4218 MAPMEENVVVSKLEKLLSMKGGKGEASYANNSQAQAIHAKSMIHFLRETLDNVKLVGGGGNDKAFVIADLGCSCGSNTINVVNVIINHIIKRYEALGCNPPEFSAFFSDLPSNDFNTLFQLLPPLATYGVSMEECLANDNQRSYFAAGVPGSFYRRLFPTKSVDVFHSAFSLHWLSKIPESVLDKRSIAYNKGKVFIHGASEATANAYKRQFKADLAGFLSARSVEMKREGSMFLVCLGRTSVDPTEQGGAGVLFGTHFQDAWDDLVQEGLISSTKRDNFNIPVYAPSLQDFKEVVEENGSFVINKLEVFKGGSPLVLKKPDDANEVGRALANSCRTVCGVLVDAHIGDKLSEELFLRVERRAANRAKELLEKLQFFHIVASLSFAQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05044 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 384 IPR029063 -
Trre9g05044 387 Pfam SAM dependent carboxyl methyltransferase 62 383 IPR005299 GO:0008168
Trre9g05044 387 Gene3D - 17 368 IPR042086 -
Trre9g05044 387 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 18 367 IPR005299 GO:0008168
Trre9g05044 387 Gene3D Vaccinia Virus protein VP39 31 313 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05044 Trre-Chr9 56206264 56210284 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05044 K18848 - gmx:100807953 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05044 9 56206264 56210284 Trre9g05044 9 56206264 56210284 ECH
Trre5g01273 5 8897283 8902283 Trre9g05044 9 56206264 56210284 PCT