Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01273 ATGGGTGATAATGTTGTAGTGTCCAATATGAAGCTTGAAAGATTGCTTAGCATGAAAGGTGGTAAAGGAGAGTCTAGCTATGCCAACAATTCTCAAGGACAGGCCATACATGCAAAGTCAATGCTTCACCTTCTAAAAGAAGCACTAGATGGAGTTGAGCTTCATGACCCTAACATTCCATTTGTGGTTGTGGATTTGGGTTGTTCATGTGGAATCAACACTATCAATGTTATGGATGTGATCATAAAAGACATCACCAAACGTTATGAGGCATTAGGATTCAATCCACCTGAATTCTCTGCTTTTTTCTCTGATCTTCCAAGTAATGACTTTAATAGCCTTTTTCAACTCCTTCCTCCATCAGCCAACTATGGTGTTAGTATGGAAGAGTGTCTTGCTGCCAACAACCACCGCTCGTACTTTGCTGCTGGTGTCCCCGGCTCTTTCTACCGGAGACTTTTTCCGGCTAGGTCGGTTGATCTTTTCCACTCTGCATTTTCTCTGCATTGGTTATCTCAGGTACCAGATTCTGTTCAAGACAAGAGGTCAGATGCATACAACAAAGGAAGGGTTTTTATCCATGGTGCTAGTGACATAACAGCAAATGCTTACAAGAAACAATTCCAAACAGATTTGGCAGGTTTTCTTAGCTCAAGATCAGTAGAGATGAAAAGTAAGGGGTCCATGTTCTTGGTTTGTTTAGGCAGGACTTCAGTGGACCCAACAGACCAAGGTGGGGCTGGTCTCCTCTTTGGGACCCATTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGGTTAATTAGCAATGAGAAAAGAGACAGTTTCAACATTCCAATTTATGCACCAAGCTTGCAAGAATTCAAGGAAGTGGTTGAAGCTGATGGATCATTTTCCATAAACAAACTTGAAGTTTTCAAAGCTGGAAGCCCTCTAGTGGTGAACCAACCAGATGATGCAAGTGAAGTTGGAAGAGCTCTAGCCAACAATTGTAGGAGTGTTTCTGGTGTTCTTGTTGATGCTCATATTGGTGATAAGCTTAGTGAGGAACTTTTCCTTAGAGTGGAGAAAAGAGCAACAAACCATGGCAAAGAGTTATTAGAGAAGCTTCAGTTCTTTCACATTGTTGCTTCCCTTTCTTTTGCTCAGTGA 1152 0.4201 MGDNVVVSNMKLERLLSMKGGKGESSYANNSQGQAIHAKSMLHLLKEALDGVELHDPNIPFVVVDLGCSCGINTINVMDVIIKDITKRYEALGFNPPEFSAFFSDLPSNDFNSLFQLLPPSANYGVSMEECLAANNHRSYFAAGVPGSFYRRLFPARSVDLFHSAFSLHWLSQVPDSVQDKRSDAYNKGRVFIHGASDITANAYKKQFQTDLAGFLSSRSVEMKSKGSMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISNEKRDSFNIPIYAPSLQEFKEVVEADGSFSINKLEVFKAGSPLVVNQPDDASEVGRALANNCRSVSGVLVDAHIGDKLSEELFLRVEKRATNHGKELLEKLQFFHIVASLSFAQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01273 383 Gene3D Vaccinia Virus protein VP39 30 309 IPR029063 -
Trre5g01273 383 Gene3D - 16 362 IPR042086 -
Trre5g01273 383 Pfam SAM dependent carboxyl methyltransferase 60 379 IPR005299 GO:0008168
Trre5g01273 383 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 17 362 IPR005299 GO:0008168
Trre5g01273 383 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 10 380 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01273 Trre-Chr5 8897283 8902283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01273 K18848 - gmx:100801476 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01273 5 8897283 8902283 Trre5g01273 5 8897283 8902283 ECH
Trre5g01273 5 8897283 8902283 Trre9g05044 9 56206264 56210284 PCT