Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04446 ATGGCGGAGAAGGTGATGATGATGATGGAAGAAGAAGATTCTTTGGAAAATGGAACCGGGTCGGGTCATGGAATAAGAAGAGTTAGTTCGAGAGCTGAAGTTGATACTTCAATGCCGTTTGAGTCTGTTAAAGAAGCGGTTACCCGTTTTGGTGGAAGTGGACCTTGGTTACCTCTTTATAGACTTGGTGAAGCTTATAACAGTATTGAAGACTTCGACATAAAGAAGATCGAGGAACAAGCAGCGAAGTTGGAAAAGGATTTGATAATGAAAGAACTCGAAACACTTGATGTGCTTGAAGAACTTGGATCTGCTAAAACGATTCTCGAGAAACTAAAGCAGCAGCTACAGTCTGAAGCACTGAAATGTTCTGCAACTCAAGATGTGAATTCATGTGAAAAGATTAAAGCTCCTGTTGAAAATTTTGAAAACAATATCAACCATCGAGAACCGATATTGATAAGTCCAATTCCCTGCGCTACTTCATCGCCTGATATGTTCTTAACCGAATTAAAAGAAGCTAAGAGGAACCTTGGTAAAACTATAACTGATCTCGGTACAATACAATCTTCTGTCGAAACATTGAATAAAAAGATGAAGAAGGAGAGACTTTTTCTCGAGAGGACACGGGAGAATCTACAATCAAAGTTTGCAGCTATCTCGGCTCAAAATGAGGCTAAGAAAGAAACAAGCACAAAGCCACCAGAAGCTCCTGTAGAAAAGGATTTTACTTTTGACATTCCACAAAATGTTGCGAGGGATTTCAAGTCGGATGTTGAACAGTACAGTGGAATGGTTGAATCTAGATCCGCAGAAGCTTCGAAGCAAGGGGTTGAGCACGGGGAGAATGAGGTTAGTATTAAGAATGCTGAAATGAGGTGGTTTGCAGCTAAAAAGATGGAAGAAGCTGCAATGGCAGCCGAAGCCGTAGCTCTTGCTGAAATCAAAGCTCTTTCTGGTGTTGATATTTCATCGCGATTTTCTACACGAGAACATCAGAAAGTGACTTCTGCATTAGAGATGTACTCTACTCTAAATCCCGAATTTCAAAAACATGAAGAGGCTATCTTGAAGAAAATAATACATGCCAATTTCAAAATCAATGAAGTAAGTGCTTCTAAGCTAACTATTCTGAAGAAACTCGAGGAAGCAACCGATGAAGTTCTACGCAGCAAACAAATTTTAACCGAAGCTTTAAACGGCATTGAAAATGCAAACAGAAAGCAACGTGCTGCTGAAGAGGCTTTAAGGAGATGGATTCCTGAAAACAATGTAAAGGGTCGGGCTATGCATAACTCGATTAAGCGAAACAAGTTCAATCTAGTTCAAAATCATGAAGCTTCGAAACCTACTGTAAGGTCCTCAGTTTCAATGAGAGATCTTCTCAGCAGAAAGCAGGTTCCTGACGATTATACTACGACAAAAGAGATGGAAGAGCACGCTGAAAGAAAGGTAGCATTGAGTCAAATGCTTCGAGCATTGAGGGAAAATCCAACTCCTCCAACTGAACATGAGAATGACGGGGGCGATCAAAAGCAGTCCGTAGCACAGAGGAAGATGTTTGGATTCATCCGAATATCATTCCCCTTGGGAAAGCGAAATGATAAAAAGACATGA 1617 0.4057 MAEKVMMMMEEEDSLENGTGSGHGIRRVSSRAEVDTSMPFESVKEAVTRFGGSGPWLPLYRLGEAYNSIEDFDIKKIEEQAAKLEKDLIMKELETLDVLEELGSAKTILEKLKQQLQSEALKCSATQDVNSCEKIKAPVENFENNINHREPILISPIPCATSSPDMFLTELKEAKRNLGKTITDLGTIQSSVETLNKKMKKERLFLERTRENLQSKFAAISAQNEAKKETSTKPPEAPVEKDFTFDIPQNVARDFKSDVEQYSGMVESRSAEASKQGVEHGENEVSIKNAEMRWFAAKKMEEAAMAAEAVALAEIKALSGVDISSRFSTREHQKVTSALEMYSTLNPEFQKHEEAILKKIIHANFKINEVSASKLTILKKLEEATDEVLRSKQILTEALNGIENANRKQRAAEEALRRWIPENNVKGRAMHNSIKRNKFNLVQNHEASKPTVRSSVSMRDLLSRKQVPDDYTTTKEMEEHAERKVALSQMLRALRENPTPPTEHENDGGDQKQSVAQRKMFGFIRISFPLGKRNDKKT 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04446 538 Coils Coil 477 497 - -
Trre9g04446 538 Coils Coil 99 119 - -
Trre9g04446 538 MobiDBLite consensus disorder prediction 498 512 - -
Trre9g04446 538 Coils Coil 196 216 - -
Trre9g04446 538 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 32 134 - -
Trre9g04446 538 Coils Coil 395 415 - -
Trre9g04446 538 Coils Coil 74 94 - -
Trre9g04446 538 MobiDBLite consensus disorder prediction 496 518 - -
Trre9g04446 538 Pfam Weak chloroplast movement under blue light 169 423 IPR008545 -
Trre9g04446 538 Pfam Weak chloroplast movement under blue light 32 150 IPR008545 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04446 Trre-Chr9 52081505 52083737 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04446 - - psat:127118081 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02171 5 16308217 16311323 Trre9g04446 9 52081505 52083737 ECH
Trre9g04446 9 52081505 52083737 Trre9g04446 9 52081505 52083737 ECH
Trre5g02171 5 16308217 16311323 Trre9g04446 9 52081505 52083737 PCT