Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02171 ATGGCTGAAAGTTGCGAAACCGAATCGGGGACCCGTAGACCCGATCCTGGAATCGGATCGGGTGAAAACCCTAACAACGGGATTAGGAAGGTGAGTTTTCGAGCTGAGATTGATACATCGCCGCCGTTCGAATCAGTGAAGGAAGCTGTGACTCGTTTCGGTGGAAGCGGACCTTGGATACCTCTTTACAGGCTTGGAGAAGCTTTTAACAACTTTGAAGATTTTGATATAAAGAAAGTGGAGGAACAAGCAGCAGAGTTGGAGAAGGATTTGATTGTCAAAGAACTCGAAACACTTGACGTGCTCGAAGAATTGGGAGCTACCAAAAGGATTGTGGAGGACTTGAAGCAGCAGCTACAAAAAGAAGCATTGAAATTATCTGCAACTCCAGATTTAAATTCTTATGAACAAGTTGGAACTCCTGTTATTAAGGAGATGAACAAGGAAAGTAATGAGAATATAGTCAACAATCAAGAACAAATATTGCAAATTCCAAGTTCATGCTCTATGTCATCACCTGATATGATTTTAATGGAGTTGAAACAAGCCAAAGTGAATCTTGGTAATACTATGAATGAACTTGAGGCGATACAATCATCTGTTGAGTCTTTAAATAAGAAGATGAAGAAGGAGAAAGCGTTTCTGGAGAAGACACGAGAAAAGCTAGCATCAAAGTTTGCAGCTGTCTCTGCTCAAGAAGAGAAGGTCCAAGAGGAAGCAAGATTGAATCCACCATCATCTCATGTGGAATTCACTTTCGATACTCCTGCAAATATGAGAAACTTCAATTTTGATTCTGAGCAGCACAATAGAATGGTTGAGACAAGAAGATCTGAAGTTTCAAAGCCCTTATCTGTGTATGAGGAGCATGAGTTTAATGTTAAGACCGCTGAAATGAGGTGGCTAGCAGCCAAAAAGATGGAAGAAGCTGCAAGGGCAGCAGAAGCTATTGCACTTGCTGAAATCAAGGCTTTATCTGGCACTGAGAGATCATATGAATTTGCTCTGCCTGAACCTCGGAAAGTCACTTTTGCTTTAGCAGAAAACATTCCTCTAAACCCCAAGGCTATGATGATACCTGAGGAGCCTACCTTGAAGAAGGTAACTGATTCAAAGTTTCAATTTGATGAAACAAATATTTCTAAACTGACTATTCTGAAAAAGTTGGAGGAGGCTTCTGAAGAAATTCTACACAGCAAACAAGTCTTAACTGATGCTTTAAACAGAATTGAAACTGCAAATAGAAAGCAACATGCTGCTAAGGAAGCGCTGCGGAAATGGATACCGGAGGTTGATCTAAAGGAGAAAACAATGTATAACTCTTTTAATTTTAACAAGTTTAATCAAGCTGGATTTCTTCAAGATTCTTCTCTACCAGATGTAACCAAAACAATAACAAACAATAATCCAAGGCCTGTTTCGAGGCCAACAACTTCAATGAGAGATGTACTTAGCAGAAAACAAATTCCTGAAGGATATGTTGCAAGAAAGGAGATGGAAGATCATACTGAAAGACGAAAGGTAGCATTGAGTCAAATGCTTAGAGCATTGAGAGAAGATCTAACCCTTTCACCAAAAGCCGAGAAAGATCATGGGAGCGATAAAAAACCGACCGTGACACCGAGGAAGAAGTTTGGATTCATCCATATATCACTCCCTATGGCTAGGTCAAGTAAGAAAAGGACATGA 1689 0.4014 MAESCETESGTRRPDPGIGSGENPNNGIRKVSFRAEIDTSPPFESVKEAVTRFGGSGPWIPLYRLGEAFNNFEDFDIKKVEEQAAELEKDLIVKELETLDVLEELGATKRIVEDLKQQLQKEALKLSATPDLNSYEQVGTPVIKEMNKESNENIVNNQEQILQIPSSCSMSSPDMILMELKQAKVNLGNTMNELEAIQSSVESLNKKMKKEKAFLEKTREKLASKFAAVSAQEEKVQEEARLNPPSSHVEFTFDTPANMRNFNFDSEQHNRMVETRRSEVSKPLSVYEEHEFNVKTAEMRWLAAKKMEEAARAAEAIALAEIKALSGTERSYEFALPEPRKVTFALAENIPLNPKAMMIPEEPTLKKVTDSKFQFDETNISKLTILKKLEEASEEILHSKQVLTDALNRIETANRKQHAAKEALRKWIPEVDLKEKTMYNSFNFNKFNQAGFLQDSSLPDVTKTITNNNPRPVSRPTTSMRDVLSRKQIPEGYVARKEMEDHTERRKVALSQMLRALREDLTLSPKAEKDHGSDKKPTVTPRKKFGFIHISLPMARSSKKRT 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02171 562 Coils Coil 177 225 - -
Trre5g02171 562 Pfam Weak chloroplast movement under blue light 35 121 IPR008545 -
Trre5g02171 562 Pfam Weak chloroplast movement under blue light 170 429 IPR008545 -
Trre5g02171 562 MobiDBLite consensus disorder prediction 520 562 - -
Trre5g02171 562 Coils Coil 70 97 - -
Trre5g02171 562 MobiDBLite consensus disorder prediction 1 29 - -
Trre5g02171 562 Coils Coil 102 122 - -
Trre5g02171 562 MobiDBLite consensus disorder prediction 521 541 - -
Trre5g02171 562 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 35 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02171 Trre-Chr5 16308217 16311323 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02171 - - mtr:11406780 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02171 5 16308217 16311323 Trre9g04446 9 52081505 52083737 ECH
Trre5g02171 5 16308217 16311323 Trre5g02171 5 16308217 16311323 ECH
Trre5g02171 5 16308217 16311323 Trre9g04446 9 52081505 52083737 PCT