Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04388 ATGGAAACTACACAACAACAACCATCTCCTTCTAAACCTAACAACAACAATAACGAAGAAATCGACGATGAAGAAGTTGAAGAAGAAGACGAAGAATACGAATACGAAGAAATCGACGAACAAGAACAACAAATTCCCCAATCAACAGAATCAAAATTACGCAACCAACGTTTCAAAGTACAAACCCTATCTCGTCGATTATCATCAGAATTAGTCCCAATTCGAGTTCACGATGTAATAATCAACGGAAATACCAAAACAAAGGATTGGATTATCGAAGCTGAACTCAATGGAATCCAAAATGCTACTACAATGCAAGAACTCATGCAAGCTTCACAAATCGCTATTGCAAAACTTCAAGCTCTTGAAATCTTTGATTCGTGTAAAGTTAAACTTGAAGCTGGACCGATTGAATTGCCTGATACTGCTAATGTTATTGTTGATGTTGTTGAAACGGAGGATAAGCTTTCTGGTACATTTGGTGTTTATATGAAACCTTCGACTAATACATGGACTTCTGAAGGAACTGTTAAGTATAAGAATGTTTTTGGTTATGGTGATCTATGGGATGCTTCTTTGGCCTATGGTGGAAACCAGGCAACAGAGGTGAGCTTAGGGGTGTATGCCCCTCACGTGAAACGATTTTTAACTCCTCTTCTGGCAAGAATGTTCATGTCTTCTCAAGACTGGCAGGAGTTTTCTTCGTACAAAGAGCAATTGATAGGAATGTCTCTTGACTTGATATCGACAAAGCACCAGGACTTAGTATACACTCTTGGTTGGCGTACCTTAACAGATCCATCACAAATGGCATCCAGGTCTACAAGGAGGCAACTTGGCCATGGGTTGCTGTCCTCTTTGAAATATACTTTTAGATTTGATAGGAGAGATTCACCTTTTAGGCCGACAAAAGGATATGCTTTTGTTTCTACCACTCGCTTTGGTGGTCTTACACCGGATTCCCGGAGCGTGCGGTTTCTGCGCCAGGAGTTTGATGTTCGCCTTGCTGTCCCTTTTGGATTTTATAATACAGCATTGAACCTTGGCATATCTGCTGGGGTTGTTTTTCCATGGGGGCAAGGGTTCAGGACCAAACCGTCTCCCCTCCCTGAAAGGTTTTATTTGGGTGGTGACTTCTCTCCAGTTTGCACCCTAGGAGGACCATCAACATTATGGGGATTCAAAACTAGGGGATTAGGTCCTACTGAACCACAGAGGCAAAGAATGGATGAAGAAAATGATGGCAAACATGACTTCATTGGAGGAGATCTTTCTGTTACTGCTTTTGCAGACCTCTCTTTTGATCTTCCTATTAGGTGGTTGAGAGAGCAAGGAATACATGCACACATTTTTGCTGGTTCTGGGAATGTTGCTAAGTTAACTCAGGACGAATACAAACATTTTTCTCCTCGGAAGTTCTTAGACTCCTTTCGGTTGTCCACCGGATGTGGAATTGTTATTCCTACTAGACTCTTCCGCCTAGAGGCTAATTACGTCCACTTGCTTAGGAGGGATGAGCATGATCGCGGGAAGACTGGATTTAAGTTCAGCTTCTCAGCTCCCTTTTAG 1569 0.4207 METTQQQPSPSKPNNNNNEEIDDEEVEEEDEEYEYEEIDEQEQQIPQSTESKLRNQRFKVQTLSRRLSSELVPIRVHDVIINGNTKTKDWIIEAELNGIQNATTMQELMQASQIAIAKLQALEIFDSCKVKLEAGPIELPDTANVIVDVVETEDKLSGTFGVYMKPSTNTWTSEGTVKYKNVFGYGDLWDASLAYGGNQATEVSLGVYAPHVKRFLTPLLARMFMSSQDWQEFSSYKEQLIGMSLDLISTKHQDLVYTLGWRTLTDPSQMASRSTRRQLGHGLLSSLKYTFRFDRRDSPFRPTKGYAFVSTTRFGGLTPDSRSVRFLRQEFDVRLAVPFGFYNTALNLGISAGVVFPWGQGFRTKPSPLPERFYLGGDFSPVCTLGGPSTLWGFKTRGLGPTEPQRQRMDEENDGKHDFIGGDLSVTAFADLSFDLPIRWLREQGIHAHIFAGSGNVAKLTQDEYKHFSPRKFLDSFRLSTGCGIVIPTRLFRLEANYVHLLRRDEHDRGKTGFKFSFSAPF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04388 522 MobiDBLite consensus disorder prediction 1 53 - -
Trre9g04388 522 FunFam Outer membrane OMP85 family protein 73 152 - -
Trre9g04388 522 FunFam Outer membrane OMP85 family protein 163 520 - -
Trre9g04388 522 Pfam Omp85 superfamily domain 181 520 IPR000184 GO:0019867
Trre9g04388 522 Coils Coil 21 41 - -
Trre9g04388 522 MobiDBLite consensus disorder prediction 20 43 - -
Trre9g04388 522 MobiDBLite consensus disorder prediction 1 16 - -
Trre9g04388 522 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 159 522 - -
Trre9g04388 522 Gene3D membrane protein fhac 73 152 - -
Trre9g04388 522 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 18 518 IPR039910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04388 Trre-Chr9 51646493 51650211 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04388 K07277 - gmx:100802876 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04388 9 51646493 51650211 Trre9g04388 9 51646493 51650211 ECH
Trre5g02117 5 15793848 15797910 Trre9g04388 9 51646493 51650211 PCT