Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02117 ATGGAAAACTCAACGAACCCTAACAATGTCAAAACCCAACGTCCCATCGTAGAAAACGACGACGAAGACATCGAAGAACAAGAAGACGAAGAGGAAGAACAAGAAGAAGACGACGATCTCCCCCAATCCCCATTGGCTCGTTTAAGAGAGCAGAAATTCAAACTCGAAACCCTTTCCCGACGACTCTCATCGGAGCTAGTCCCAATCCGAGTCCACGATGTCATAATTCGCGGCAACACGAAAACCAAGGATTGGGTAATTGAAGCTGAACTCAAGGGAATCGAAGATGTATCCACTATGCAGGAACTCATTCGCGCCTCTGAAATCGCACTCGCTAGGCTTCGGAATCTCGGGGTTTTTGAGTCTAGTAAGCTTAGTCTTGAACCTGGACCGGTTGAATTGCCTAACACTGCCAATGTTGTTATCGACATTGTTGAAGCTGTTAACAAAATTTCTGGTGAATTTGGTGTTTATACCAAACCCTCGACTAGTTCTTGGACTGCTGAAGGTACTCTTAAGTACAAAAACTTGTTGGGTTATGGTGATCTATGGGATGCTTCTTTGGCTTATGGTGCCAACCAAGCAACAGAGGTGAGTCTAGGGCTATATGCTCCTCGACTTAAAGGAACTTCAAATCCTGTTGTAGCACGACTGTCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCGTACAAAGAGCAATTATTGGGCATGTCTCTTGGCTTAATCTCAACAGAGCACCATGATTTGGCATACACGCTTGGATGGCGTACCTTAACAGATCCATTACAAATGGCATCCAGGTCTGTAAGGAGGCAGCTTGGGCATGGTTTGCTATCATCTTTGAAGTATACATTTAAAATTGATCGGAGAAACTCACCAATTAGGCCTACAAAAGGACATGCTTTTGTTTCTACCACTCACCTTGGTGGCCTTACACCAGATCACCGGAGCTTGCGGTTTCTGCGTCAGGAGTTTGATCTTCGGTTTGCTGTCCCCTTTGGGTTTTATAATACAGCACTGAACTTAGGGATTTCTGCTGGTGCTGTTTTTCCATGGGGACAAGGTTTCATGAACAGGCCATCTCCACTTCCTGAACGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTTGGAGGGCCAATGACATTGTGGGGATTTAGAACTAGGGGATTAGGTCCGGCTGAACCACGAAGACAAAGCAGAGATGTATTCAATGATGAAAGTAATGATCCTTCTAGATGGGACTTCGTTGGAGGAGATCTTGCTGTTACAGCTTTTGCAGACCTCTCTTTTGATCTTCCAATAAGGTGGTTAAGAGAACACGGGATCCATGGCCATGTTTTCGCTGGTGCCGGGAATACTGCTAAATTAACTCAGAATGAATATAAGCATTTCTCTCCTCGGAGGTTCTTAGAATCCTTTCGAACATCAGTGGGATGTGGATTTGTTATTCCTACTAGACTTTTCCGCCTAGAGGCTAACTACTACTACATATTCAGGCAGAATGAACATGATCGTGGCAAAACTGGATTTAGGTTCAGCTTCTCAGCTCCTTCATAG 1569 0.4468 MENSTNPNNVKTQRPIVENDDEDIEEQEDEEEEQEEDDDLPQSPLARLREQKFKLETLSRRLSSELVPIRVHDVIIRGNTKTKDWVIEAELKGIEDVSTMQELIRASEIALARLRNLGVFESSKLSLEPGPVELPNTANVVIDIVEAVNKISGEFGVYTKPSTSSWTAEGTLKYKNLLGYGDLWDASLAYGANQATEVSLGLYAPRLKGTSNPVVARLSMLSQDWQEFSSYKEQLLGMSLGLISTEHHDLAYTLGWRTLTDPLQMASRSVRRQLGHGLLSSLKYTFKIDRRNSPIRPTKGHAFVSTTHLGGLTPDHRSLRFLRQEFDLRFAVPFGFYNTALNLGISAGAVFPWGQGFMNRPSPLPERFYLGGDFSPVCTLGGPMTLWGFRTRGLGPAEPRRQSRDVFNDESNDPSRWDFVGGDLAVTAFADLSFDLPIRWLREHGIHGHVFAGAGNTAKLTQNEYKHFSPRRFLESFRTSVGCGFVIPTRLFRLEANYYYIFRQNEHDRGKTGFRFSFSAPS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02117 522 Gene3D membrane protein fhac 68 147 - -
Trre5g02117 522 MobiDBLite consensus disorder prediction 19 39 - -
Trre5g02117 522 Pfam Omp85 superfamily domain 176 519 IPR000184 GO:0019867
Trre5g02117 522 FunFam Outer membrane OMP85 family protein 68 147 - -
Trre5g02117 522 Coils Coil 17 37 - -
Trre5g02117 522 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 158 520 - -
Trre5g02117 522 Pfam Surface antigen variable number repeat 69 146 IPR010827 GO:0019867
Trre5g02117 522 Coils Coil 45 65 - -
Trre5g02117 522 FunFam Outer membrane OMP85 family protein 158 520 - -
Trre5g02117 522 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 41 519 IPR039910 -
Trre5g02117 522 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02117 Trre-Chr5 15793848 15797910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02117 K07277 - gmx:100785408 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02117 5 15793848 15797910 Trre5g02117 5 15793848 15797910 ECH
Trre5g02117 5 15793848 15797910 Trre9g04388 9 51646493 51650211 PCT