Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04356 ATGGGAAATAAAATGGTAACATACAACAAGTACAAAAGTTTTTTGTTCTTTATCAAAAAGTACAAGCTAACTGAGCTAGTTCCACCTGAGGACCTCAAGGAGGTTTTCTCCAAGTTTGCCGGAGGGGGATCTCATATGTCGGTAGAGCAGCTATATCGGTTTCTTGTGGAGCATCAAGGTGAGGAGAATTTCACCTTATCGGATTCGGAGAAAATTGTTGACAAGGTTTTGAAACTGAGAAGGACACATCAAGAAACAGTTCATGTTGTTGATCAAAATAGAGAAAGGGAAATCACCCTAGATGATATCTTTCGATTTTTGTTCCTAGATGAATTCAACGGTCCTTTGGAAACCGAGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATACACAGGACACAATTCCTATCTCACTGGAAATCAACTGAGCAGTGATTGCAGCGAAGAGCCAATCATAAAGGCGTTGCAACGAGGCGTGCGTGTTATAGAACTCGATTTATGGCCAACTACTAATAAAGATGATATTAAAGTTGATCATGGATGGACTCTTACCAATCCTGTATCACCTATCAAATGTTTGGAGTCTATAAAGAAATATGGTTTTGTTGCATCTCAATATCCAGTGATCATAACTATAGAAGACCATCTTACAGAAGAACTTCGAGCGAAATTCGCAGAAATGGCAACTCAAATATTTGGAGAAATACTTTATTATCCTCAACAATCAGAATATTTAAGTTTAACAGAATTCCCTTCACCGGAATCATTGAAAAATCGAGTTATTATATCAACCAAACCTCCCAAAGAACGTTTTAAGTCCAACCGAATCAAGGACAACGGAAACTATCCTGCTTTAGATGGAATTAGTGAATCATCAGAAGATGAATCATCGGGAAAGGAATCACCGGACTCCATGATTGAAGTGGAGATTAAAAGCACGAATGGACGTGATCGCGATGAGGGAGACACGAGTTCATGTGAATGTGATCAAAGATTATTTCAAGAGTGTTCACCTGATTACAGAACTATAATAACAATTCATAATAAGAAACTCAAGGGTAGCTTGAAAGACAAATTAAAAACTGATGGTGAAGTTAGACGGTTAAGTTGGAGCGAAACAACTTTAGAAAAGGCTTCGGAATCTCACGGAACAGACATCATTAGGTTTACACAGAAAAATATCCTTAGGGTATACCCTAGGGCGACACGTGTCAAATCCACAAATTTCAAACCACATCTTGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGATTGGAAAATCACTCTGGTTGATGCAGGGTATGTTCAGAGCAAATGGAGGATGTGGTTATGTGAAAAAGCCTGAAATTTTAATGCAGAAACTTCAATGTGACAATGAGTTTGATCCTAAAATGATGATGCCGGTGAAAAAGACATTAAAGGTAAAAATATACATGGGACATGGTTGGAGCTTAGATTTCAGTCCTACACACTTTGATATGTTCTCTCCACCAGATTTTTATACAAAGGTTAGTATTGTTGGTATGCCTGCTGATGTTGCAAAGAAGAAGACAAAAGTAATCATGGACAACTGGTTTCCTGTGTGGAATGAAGAGTTTGATTTCCCTTTGACTGTTCCAGAACTTGCTTTACTTCAGATACAAGTTAAGGACAAAGATCAAGGAGGAAAAGATGATTTTGCTGGTCAAACATGTTTGCCAGTTTCAGAGCTAAAACTTGGTTTTAGATCAGTCCCTTTGTATAATGAAAAGGGAGAACAATTCAAATCTGTAAAGTTGTTAATGAGGTTTCAATTTGAATCATGA 1830 0.3781 MGNKMVTYNKYKSFLFFIKKYKLTELVPPEDLKEVFSKFAGGGSHMSVEQLYRFLVEHQGEENFTLSDSEKIVDKVLKLRRTHQETVHVVDQNREREITLDDIFRFLFLDEFNGPLETEVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSEEPIIKALQRGVRVIELDLWPTTNKDDIKVDHGWTLTNPVSPIKCLESIKKYGFVASQYPVIITIEDHLTEELRAKFAEMATQIFGEILYYPQQSEYLSLTEFPSPESLKNRVIISTKPPKERFKSNRIKDNGNYPALDGISESSEDESSGKESPDSMIEVEIKSTNGRDRDEGDTSSCECDQRLFQECSPDYRTIITIHNKKLKGSLKDKLKTDGEVRRLSWSETTLEKASESHGTDIIRFTQKNILRVYPRATRVKSTNFKPHLGWMYGAQMVAFNMQGIGKSLWLMQGMFRANGGCGYVKKPEILMQKLQCDNEFDPKMMMPVKKTLKVKIYMGHGWSLDFSPTHFDMFSPPDFYTKVSIVGMPADVAKKKTKVIMDNWFPVWNEEFDFPLTVPELALLQIQVKDKDQGGKDDFAGQTCLPVSELKLGFRSVPLYNEKGEQFKSVKLLMRFQFES 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04356 609 Gene3D - 23 114 - -
Trre9g04356 609 Gene3D Phosphatidylinositol (PI) phosphodiesterase 119 472 IPR017946 GO:0006629|GO:0008081
Trre9g04356 609 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 13 607 IPR001192 GO:0035556
Trre9g04356 609 Gene3D C2 domain 474 609 IPR035892 -
Trre9g04356 609 SMART C2_3c 480 588 IPR000008 -
Trre9g04356 609 SUPERFAMILY PLC-like phosphodiesterases 122 461 IPR017946 GO:0006629|GO:0008081
Trre9g04356 609 Pfam Phosphatidylinositol-specific phospholipase C, X domain 124 269 IPR000909 -
Trre9g04356 609 MobiDBLite consensus disorder prediction 274 309 - -
Trre9g04356 609 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 477 607 IPR035892 -
Trre9g04356 609 ProSitePatterns EF-hand calcium-binding domain. 91 103 IPR018247 -
Trre9g04356 609 PRINTS Phospholipase C signature 398 419 IPR001192 GO:0035556
Trre9g04356 609 PRINTS Phospholipase C signature 253 270 IPR001192 GO:0035556
Trre9g04356 609 PRINTS Phospholipase C signature 127 145 IPR001192 GO:0035556
Trre9g04356 609 PRINTS Phospholipase C signature 574 584 IPR001192 GO:0035556
Trre9g04356 609 PRINTS Phospholipase C signature 153 173 IPR001192 GO:0035556
Trre9g04356 609 PRINTS Phospholipase C signature 419 437 IPR001192 GO:0035556
Trre9g04356 609 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 373 459 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre9g04356 609 Pfam C2 domain 481 582 IPR000008 -
Trre9g04356 609 SMART plcx_3 122 269 IPR000909 -
Trre9g04356 609 ProSiteProfiles C2 domain profile. 459 590 IPR000008 -
Trre9g04356 609 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 122 269 - -
Trre9g04356 609 CDD C2_PLC_like 478 608 - -
Trre9g04356 609 SUPERFAMILY EF-hand 3 124 IPR011992 -
Trre9g04356 609 Pfam Phosphoinositide-specific phospholipase C, efhand-like 29 75 IPR015359 -
Trre9g04356 609 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 370 457 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre9g04356 609 SMART plcy_3 344 460 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre9g04356 609 FunFam Phosphoinositide phospholipase C 475 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04356 Trre-Chr9 51362645 51365999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04356 2 608 Acyl Lipid Metabolism Gene Families AT2G40116 54.531 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04356 K05857 - gmx:100820253 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02087 5 15518350 15522099 Trre9g04356 9 51362645 51365999 PCT