Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02087 ATGAAAACAAACATCTTGAAGTTGTCAAAATATTTGATAAAAAAAAGTAATTTGAATAAGGCAGAACCACCTTTTGATCTTAAGGAAGCATTTTCCAAGTTTACAAATGGTGAGAATCACATGTCAAAGGATCAACTACTTAGATTCATGGTGGAGTATCAAGGAGAACAAAATTGCACCTTATTGGATTTGGAACCAATTTTTGAAAAGGTTTTGCAAAATGAAAGTACTAGCAATATTGCTGGACTTAGTTTGGATAAGTTCATTGATTTTCTGCTTCTTGATGATTTCAATGGTCCTTTAAAAAATGAGGTACATCATGATATGAATGCTCCCTTGTCACATTATTTCATGTATACAGGACACAATTCCTACCTTACTGGGAATCAATTAACTAGTGAGAGCAGTGATGAGCCAATTATAGAGGCTTTGAAACAAGGTGTAAGAGTAATTGAACTTGATTTATGGGCTTCAACTAAACATGGTGGTATCAAAGTAGTTCATGGAAGGACTCTTACCACTCCTGTTTCACTAACCACATGTTTGGAATCCATAAAGAATCATGCTTTTGTCAAGTCTGATTTTCCAGTCATTTTAACTTTGGAAGATCACTTAACACCAAAACTTCAGGCTAAATTTGCAGAAGTGGCGATTCAAATATTTGGAGAAATGCTTTATTGTCCTCAAACAGATTTTTTGACAGAATTTCCATCACCAGCATCACTCAAAAGAATGATAGTTATATCAACTAAACCACCAAAGGAATATCCTCAACCTGATGGTGTCAACAATCAGATTCCAAATGAAAGTGAATCATCTGAAGATGAAACATGGGAATTGCAAGATTCTATAGTTGTTAAACCGAAAAATGAAGATAAGGAAGATATAAATACAAGTGATTACAAATCAAATCTACAAAGTCCGCGTGAATACCGACATTTGATTACAATCCATGGTGGAAAATCAGAAGGTACTATGAAAGATAGGCTAAAAGTTGATGGTAAAGTTAGAAGACTAAGTTTGAGTGAGAAGAAACTCAAAACTGCTTCTGAATCTCATGGAGCTGAACTTATTAGGTTCACACAGAAAAATATCCTCAGAATTTTTCCTAAAGGAGAACGCGTAAAATCCTCAAATTTTAGGCCGCATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGTATGGAAAATCACTCCGGTTGATGCGAGGGATGTTCAAAGCAAACGGAGGATGCGGTTATGTGAAGAAACCTGAATTTCTAATTCAAGAAGGGGTAAATAATGAGGTTTTTGATCCTAAAAGAACATTGCCAGTGAAACAGATATTAAAAGTAAAAGTATACAAAGGTGTTGGCTGGAAGTCAGATTTCAGTCGAACACACTTCGATCAATTCTCTCCACCAGACTTCTACGCAAAGGTTTGTATTGTTGGAGTGGGAGCTGATTGTGCGAAGAAAAAAACACATGTAAAGAAGGACAATTGGTATCCGATTTGGGACGAAGAGTTCGAATTCAAGTTGACTGTTCCAGAGCTCGCGTTGCTTCGGATTGAAGTAAATGATAAAGATCAGACAAAAGATGATTTTGCTGGACAAACTTGTTTGCCTGTATCAGAGCTAAGATGTGGATTTCGGTCTGTTCGTTTGTGTGACAGAAAAGGAAAGGAATTGAAGTCTGTCAAGCTTTTACTTCGCTTCCAACTTGAAACTTTATAG 1731 0.3634 MKTNILKLSKYLIKKSNLNKAEPPFDLKEAFSKFTNGENHMSKDQLLRFMVEYQGEQNCTLLDLEPIFEKVLQNESTSNIAGLSLDKFIDFLLLDDFNGPLKNEVHHDMNAPLSHYFMYTGHNSYLTGNQLTSESSDEPIIEALKQGVRVIELDLWASTKHGGIKVVHGRTLTTPVSLTTCLESIKNHAFVKSDFPVILTLEDHLTPKLQAKFAEVAIQIFGEMLYCPQTDFLTEFPSPASLKRMIVISTKPPKEYPQPDGVNNQIPNESESSEDETWELQDSIVVKPKNEDKEDINTSDYKSNLQSPREYRHLITIHGGKSEGTMKDRLKVDGKVRRLSLSEKKLKTASESHGAELIRFTQKNILRIFPKGERVKSSNFRPHLGWMYGAQMVAFNMQGYGKSLRLMRGMFKANGGCGYVKKPEFLIQEGVNNEVFDPKRTLPVKQILKVKVYKGVGWKSDFSRTHFDQFSPPDFYAKVCIVGVGADCAKKKTHVKKDNWYPIWDEEFEFKLTVPELALLRIEVNDKDQTKDDFAGQTCLPVSELRCGFRSVRLCDRKGKELKSVKLLLRFQLETL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02087 576 Gene3D - 23 99 - -
Trre5g02087 576 SUPERFAMILY EF-hand 19 109 IPR011992 -
Trre5g02087 576 PRINTS Phospholipase C signature 235 252 IPR001192 GO:0035556
Trre5g02087 576 PRINTS Phospholipase C signature 365 386 IPR001192 GO:0035556
Trre5g02087 576 PRINTS Phospholipase C signature 540 550 IPR001192 GO:0035556
Trre5g02087 576 PRINTS Phospholipase C signature 138 158 IPR001192 GO:0035556
Trre5g02087 576 PRINTS Phospholipase C signature 386 404 IPR001192 GO:0035556
Trre5g02087 576 PRINTS Phospholipase C signature 112 130 IPR001192 GO:0035556
Trre5g02087 576 CDD C2_PLC_like 445 574 - -
Trre5g02087 576 Pfam Phosphatidylinositol-specific phospholipase C, X domain 109 251 IPR000909 -
Trre5g02087 576 SMART plcy_3 311 427 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre5g02087 576 Pfam C2 domain 447 545 IPR000008 -
Trre5g02087 576 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 107 251 - -
Trre5g02087 576 Gene3D C2 domain 442 576 IPR035892 -
Trre5g02087 576 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 19 573 IPR001192 GO:0035556
Trre5g02087 576 SMART plcx_3 107 251 IPR000909 -
Trre5g02087 576 MobiDBLite consensus disorder prediction 252 277 - -
Trre5g02087 576 FunFam Phosphoinositide phospholipase C 442 574 - -
Trre5g02087 576 Gene3D Phosphatidylinositol (PI) phosphodiesterase 104 439 IPR017946 GO:0006629|GO:0008081
Trre5g02087 576 SMART C2_3c 447 554 IPR000008 -
Trre5g02087 576 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 339 425 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre5g02087 576 SUPERFAMILY PLC-like phosphodiesterases 107 428 IPR017946 GO:0006629|GO:0008081
Trre5g02087 576 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 340 426 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Trre5g02087 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 447 572 IPR035892 -
Trre5g02087 576 ProSiteProfiles C2 domain profile. 428 556 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02087 Trre-Chr5 15518350 15522099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02087 7 574 Acyl Lipid Metabolism Gene Families AT2G40116 54.362 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02087 K05857 - gmx:100803435 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02087 5 15518350 15522099 Trre5g02087 5 15518350 15522099 ECH
Trre5g02087 5 15518350 15522099 Trre9g04356 9 51362645 51365999 PCT