Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04316 ATGGAGGAAAACGACACGTGTACCACCGGCGTCGGAAGAATGAGTGCAAGATTAACCGACGTAGTTCTCGACTGCGTTATGCCGTACATCCACGACGCAAAAGACAGAGACGCAGTTTCACAGGTCTGTAAACGATGGTACGAGATCGATTCATCAACACGAAAGCACGTGACGATTGCTTTATGTTACACAACAACGCCGGACAGACTCCGGCGACGGTTTCCTCATCTTGAATCGTTGAAACTGAAAGGAAAACCTAGAGCTGCGATGTTTAATTTGATACCGGAAAATTGGGGAGGATTTGTTACTCCTTGGGTTAGAGAAATTGAAAAGTATTTCGATTGTTTGAAATCGTTACACTTTCGAAGAATGATTGTTACTGATGATGATCTTTCAATTCTTGCTCGGTCTCGTCATCAAAGTCTTCATGCTCTTAAGCTTGAAAAGTGTTCTGGATTTTCTACTGATGGACTCTACAATATTTGTCACACTTGCAAGAATTTAAGAGTCTTGTTTATGGAGGAAAGCTCGGTTGTTGAGAATAATGGTGAATGGCTGCATGAGCTTGCGTTGAATAATACCGTACTTGAGACACTGAATTTTTACTTGACTGATATAAACAATATCAGAATTCAGGACCTTGAACTTATAGCGAAAAACTGCCCCAACTTGGTCTCTGTTAAAATTACTGATTGTGAAATCTTGAATCTGGTGAACTTCTTTCGATATGCATCTTCTCTAGAAGAATTTTGTGGAGGTTCCTACAATGAAGATCCAGAAAAGTACGCTGCTGTATCATTACCAGCGAAGTTAAATCGATTGGGTTTGACATATATTGGAAAGAATGAAATGCCAATTGCGTTCCCTTATGCAGCCCAATTGAAAAAGTTAGACCTTCTCTATGCAATGCTGGATACGGAGGATCATTGTACATTAATTGAGAAATGCCCCAACTTGGAAATCCTTGAGTCAAGGAATGTAATTGGAGACAGAGGATTAGAAGTACTTGCTCGCTGTTGTAAGAAGCTGAGAAGGCTAAGAATCGAAAGAGGTGATGATGATCAAGGAATGGAAGATGAAGAAGGCGTTGTTTCCCAAAGAGGGCTAATTGCCTTATCACAGGGCTGTCCAGAACTTGAATACATGGCTGTTTATGTATCCGACATCACAAATGCATCTCTAGAACACATTGGTACTCACTTGAAAAACCTCTGCGATTTTCGCCTCGTCTTGCTAGACCGAGAGGAGAGGATAACTGATTTGCCACTTGACAACGGTGTGAGGGCTTTACTGAGAGGTTGCGAAAAGCTTAGAAGATTTGCTCTATATCTCAGACCCGGAGGCTTAACCGATGTAGGCTTAGGTTACATAGGACAATACAGTCCAAACGTGAGATGGATACTTCTTGGTTATGTCGGCGAAACTGATGCAGGGCTCTTGGAATTCTCCAAAGGTTGTCCAAGTCTTCAAAAACTTGAAATGCGAGGGTGTTCATTTTTCAGTGAATATGCATTAGCTGTTGCTGCAACTAGATTAAAATCTTTGAGGTATCTTTGGGTACAAGGATATGGAGCTTCATCTTCTGGGCGTGATCTTTTGGCAATGGCGCGACCCTATTGGAATATTGAGGTGATTCCTTCTAGACGTGTGGTCGTTAACAATCAACAAGATGAGTCTGTTGTTATGGAGATGGAGCATCCAGCTCATATTCTTGCTTATTACTCCCTTGCTGGACCAAGATCAGATTTTCCTGATACTGTTATACCATTGGATCCTGCTGCTGCACCATATGTTAACACCTAA 1803 0.4165 MEENDTCTTGVGRMSARLTDVVLDCVMPYIHDAKDRDAVSQVCKRWYEIDSSTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPENWGGFVTPWVREIEKYFDCLKSLHFRRMIVTDDDLSILARSRHQSLHALKLEKCSGFSTDGLYNICHTCKNLRVLFMEESSVVENNGEWLHELALNNTVLETLNFYLTDINNIRIQDLELIAKNCPNLVSVKITDCEILNLVNFFRYASSLEEFCGGSYNEDPEKYAAVSLPAKLNRLGLTYIGKNEMPIAFPYAAQLKKLDLLYAMLDTEDHCTLIEKCPNLEILESRNVIGDRGLEVLARCCKKLRRLRIERGDDDQGMEDEEGVVSQRGLIALSQGCPELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREERITDLPLDNGVRALLRGCEKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWILLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATRLKSLRYLWVQGYGASSSGRDLLAMARPYWNIEVIPSRRVVVNNQQDESVVMEMEHPAHILAYYSLAGPRSDFPDTVIPLDPAAAPYVNT 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04316 600 Gene3D - 1 54 - -
Trre9g04316 600 SUPERFAMILY RNI-like 107 534 - -
Trre9g04316 600 Pfam Transport inhibitor response 1 protein domain 75 121 IPR041101 -
Trre9g04316 600 CDD F-box_AtTIR1-like 17 54 - -
Trre9g04316 600 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 34 251 - -
Trre9g04316 600 Pfam F-box 17 56 IPR041567 -
Trre9g04316 600 SMART LRR_CC_2 139 164 IPR006553 -
Trre9g04316 600 SMART LRR_CC_2 376 400 IPR006553 -
Trre9g04316 600 SMART LRR_CC_2 486 511 IPR006553 -
Trre9g04316 600 SMART LRR_CC_2 316 339 IPR006553 -
Trre9g04316 600 SMART LRR_CC_2 434 460 IPR006553 -
Trre9g04316 600 FunFam Coronatine-insensitive protein 1 55 593 - -
Trre9g04316 600 Gene3D Ribonuclease Inhibitor 55 594 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04316 Trre-Chr9 50980770 50984734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04316 K13463 - gmx:100793081 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04316 9 50980770 50984734 Trre9g04316 9 50980770 50984734 ECH
Trre5g02015 5 15003856 15006258 Trre9g04316 9 50980770 50984734 PCT