Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02015 ATGACAGAAGATCGAAGCGTGAAGCACAACCGTGTCGTTGACGTGGTCTTAGACTGTGTAATACCATACATCAACGATCCAAAAGACCGTGACGCGGTTTCTCAAGTTTGTCGGCGATGGTATGAAATAGATTCGTCGACTCGGAAACACGTGACGATTGCTCTGTGTTACACAACGACGCCGTGGCGTCTCCGGCACAGGTTTCCGCATCTTGAATCGCTGATACTGAAGGGGAAACCTAGAGCGGCAATGTTCAATTTGATTCCTGAAGATTGGGGAGGTCATGTTACGCCTTGGATTAAAGAAATTTCTCAGTATTTTGATTGTTTAAAGAATCTTCATCTTCGTCGTATGATTGTTCAAGATTCAGATCTTATGCTTCTTGCTCGTACACGTGGTCATGTTCTTCAGTCTCTTAAGCTTGATAAGTGTTCTGGTTTTTCTACTCATGGTCTTAGCTTTATTGCTCGCTTTTGCAGGAACCTAAAAGTTTTTCTTTTGGAGGAAAGTACAATTGTGGAGAACGATGGTGAATGGCTACATGAGCTTGCTTTGAATAATACGGTTCTTGAGTCTCTAAATTTTTACTTGACTGATATTGTTCATGTCAAAGTTCAGGACCTTGAGCTTTTAGCCAAAAATTGCCCCAACTTGGTGTCTGTGAAAATTACCGATTGTGAAATCTTGGATCTTGTGAACTTTTTCCGCAATGCAACTGCTCTGGAAGAATTTTCTGGAGGCACCTACAATGAGGAACCAGAAAGATACACTGCTGTATCATTACCAGCAAAGTTATGTCGATTAGGTCTAACTTTTATTGGGAAGAATGAGTTGCCAATGGCGTTCACGTTTGCAGCTGCACTGAAAAAATTGGATCTCCTCTATGCCTTGCTAGATACAGAGGATCATTGTATGTTGATCCAAAAGTGCCCAAATTTAGAAGTCCTTGAGACAAGGAATGTAATTGGGGATAGAGGATTGACGGTTCTTGGTAACTGTTGTAAGAGGTTAAAAAGACTTAGGATTGAACGAGGTGATGATGATCAAGGAATGGAGGACGTAGAAGGTTCTGTTTCCCACAGAGGACTAATTGCTTTAGCACAGGGATGTACAGAACTTGAATATATGGCTGTTTACGTGTCCGATATTACAAATGCATCTCTGGAACATATAGGTACTCACTTGAAGAACCTTTGTGATTTTCGCCTTGTCTTGCTTGATCATGAAGAGAAAATATCGGATCTGCCGCTTGACAACGGGGTGAGGGCTTTGCTGACGGGGTGTGACAAGCTTAAAAGGTTTGCACTATATCTGCGGCGAGGTGGCTTGACTGATGTTGGTCTTGGTTACATTGGGCAATACAGTCAAAATGTGAGGTGGATGCTCTTAGGTTATGTGGGGCAAACTGATGCAGGTCTTTTGGAATTCTCAAAGGGCTGTCCTAATCTTCAGAAACTTGAAATGAGAGGGTGTTCCTTTTTCAGTGAGCATGCACTTGCTGTTGCTGCAACACAATTGTCTTCTCTTAGGTACTTGTGGGTTCAAGGGTATAGTGCATCTCCATCTGGACGCGATCTTTTGGCGATGGCTCGCCCCTTTTGGAATATTGAGTTGATTCCTTCTAGATGGGTTGCTATCAATAATAATAATAATGATAATAATATCGACGAGCCTGCTGTTGTTGTTGATCATCCAGCTCATATTCTTGCATACTACTCTCTTGCTGGCCAAAGATCAGATTTTCCAGATACTGTTGTACCTCTGAATCCTGGAGAATATTTGCAGTTTCATGTCTAG 1797 0.4213 MTEDRSVKHNRVVDVVLDCVIPYINDPKDRDAVSQVCRRWYEIDSSTRKHVTIALCYTTTPWRLRHRFPHLESLILKGKPRAAMFNLIPEDWGGHVTPWIKEISQYFDCLKNLHLRRMIVQDSDLMLLARTRGHVLQSLKLDKCSGFSTHGLSFIARFCRNLKVFLLEESTIVENDGEWLHELALNNTVLESLNFYLTDIVHVKVQDLELLAKNCPNLVSVKITDCEILDLVNFFRNATALEEFSGGTYNEEPERYTAVSLPAKLCRLGLTFIGKNELPMAFTFAAALKKLDLLYALLDTEDHCMLIQKCPNLEVLETRNVIGDRGLTVLGNCCKRLKRLRIERGDDDQGMEDVEGSVSHRGLIALAQGCTELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDHEEKISDLPLDNGVRALLTGCDKLKRFALYLRRGGLTDVGLGYIGQYSQNVRWMLLGYVGQTDAGLLEFSKGCPNLQKLEMRGCSFFSEHALAVAATQLSSLRYLWVQGYSASPSGRDLLAMARPFWNIELIPSRWVAINNNNNDNNIDEPAVVVDHPAHILAYYSLAGQRSDFPDTVVPLNPGEYLQFHV 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02015 598 SUPERFAMILY RNI-like 359 518 - -
Trre5g02015 598 SUPERFAMILY RNI-like 87 399 - -
Trre5g02015 598 CDD F-box_AtTIR1-like 10 48 - -
Trre5g02015 598 FunFam Coronatine-insensitive protein 1 49 591 - -
Trre5g02015 598 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 28 249 - -
Trre5g02015 598 Pfam Transport inhibitor response 1 protein domain 69 115 IPR041101 -
Trre5g02015 598 Gene3D Ribonuclease Inhibitor 49 591 IPR032675 -
Trre5g02015 598 Pfam F-box 10 50 IPR041567 -
Trre5g02015 598 Gene3D - 2 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02015 Trre-Chr5 15003856 15006258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02015 K13463 - gmx:732662 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02015 5 15003856 15006258 Trre5g02015 5 15003856 15006258 ECH
Trre5g02015 5 15003856 15006258 Trre9g04316 9 50980770 50984734 PCT