LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g04231	ATGGGAAATGTGAAGTTGCAAATGCAAACTGGTATCAATGCAATGGAAGAGGAAGCTGGGCAGAGTGGTGCTGGATATCCTAGCAGGACTACTGTGGCATGCATGATTAATGCAGAAATCGGTGCTGTTTTGGCAGTTATGCGAAGAAATGTTAGATGGGGTGTTCATTATATGTCAGATGATGATCAATTGGAGCACTCACTTGTTCAGTCTTTAAAGGCATTAAGGCGGCAAATTTTTTCATGGCACAGTCAGTGGCATGTCATAAACCCTGTCTTGTATCTCCAGCCTTTTCTGGATGTGATTCAATCAGATGAAACTGGTGCACCAATTACTGGTGTTGCTCTGTCGTCTGTTTACAAGATCTTAACTCTAGATGTAATTGATCAAAACACTGTCAATATTGGGGATGCCATGCACTTGGTAGTTGATGCTGTCACAAGTTGCAGATTCGAGGTGACCGATCCAGGATCCGAAGAAGTGGTTTTAATGAAGATATTACAAGTTCTTCTGGCATGTGTGAAAAGTAAAGCATCTGTAATGCTGAGTAACCAACATATTTGCACCATAGTAAACACTTGTTTCCGTATAGTTCATCAAGCAGGAACCAAAAGTGAGTTACTTCAGAGAATAGCACGGTACACAATGCATGAACTTGTTCGGTCTATTTTCTGTCACCTTCAAGACATAGATGTCACAGATCAATCATTGGTAAATGGGAGCACTGCTTTAAAAGAAGAGATTGATGGGCAAAAAAATGAGCATAATTCTGCAAACAGTCAATTGGAGAATGGTAGTTTGATTTCTGCAAGTGATAGTCAATCTGTATCCACAGGCATTGCTTCCAGTACTTTGACTGATGTGGCAGCAATAACAGTGGATGTAACCACTGCTGCAAGCAGTGGCAAGGAGACTGATCCGAATGAACAGCTCATGAATGAACCGTATGGAATTCCTTGCATGGTGGAAATATTTCATTTCATGTGTTCACTTTTGAATGTTGTTGAGCATATGGGAATGAGTCCTCGATTAAACACAATTGCATTTGATGAAGACGTTCCTCTTTTTGCCTTAACTTTGATTAATTCGGCCATAGAGTTGGGAGGGTCTTCCTTTCACCGACACCCTAGGTTGTTGAGCTTAATTCAGGATGAATTATTTGGCAATCTTATGCAATTTGGTTTGTCAATGAGTCCCCTTGTACTTTCAATGGTAAGTAGCATTGTTTTAAATTTGTATCACCATCTTCGTACAGAACTCAAGTTACAACTAGAAGCATTTTTTTCTTGTGTAATTTTGAGGCTTGCACAAAGCAAATATGGGGCTTCATATCAACAACAGGAAGTAGCCATGGAGGCACTTGTTGACTTCTGCAGGCAAAAAGCATTTGTGGTGGAGATGTATGCTAACTTTGACTGTGACATAACTTGCAGTAATATCTTTGAAGACATTGTTAATTTGTTGTCCAAGAGTGCATTTCCTGTGAACAGTCCATTATCTACCATGAATATTCTTGCTTTGGACGGTCTTATTGCTGTCATACAAGGAATGGCTGAAAGGATAGGTAACGGATCTTTGAATTCAGAACATTCTATTGTGAATCTTGAAGAGTATACTCCATTCTGGCTTGAAAAGTGTGAAAATTTCACCGATCCAAATAATTGGGTCCCTTTTGTTGGTCGAAGAAAGCAATTCAAGAAAAGATTGATGATTGGAGCCGATCATTTTAATCGTGATACTAAGAAAGGTCTTCAGTTTCTCCAAGGAACACATCTTTTGCCCGAAAAGCTTGATCCCCAAAGTGTTGCCTTCTTTTTCAGATACACTACTGGGTTGGATAAGAATCTCATTGGTGATTACCTTGGAAACCATGATGAGTTCTGTGTTGACGTTCTTCATGAATTTGCTAGAACATTTGATTTCAAAGACATGGCATTAGATACAGCCTTGCGTATTTTTTTGGAGACTTTCAGATTGCCCGGAGAATCACAGAAGATCCAGAGGGTGCTCGAAGCTTTTTCAGAGAGATATTATGAGCAATCACCACATATCCTAGCTAACAAGGATGCTGCTCTCTTGTTATCATATTCAATTATAATGCTTAATACAGATCAGCACAACTCACAGGTCAAAAAGAAGATGACAGAAGAGGATTTTGTCCGAAATAATAGGCGAATAAATGGTGGTAATGATCTACCCCGAGAAGTCCTGTCTGGACTATATAATTCGATTTGTAAAAATGAGATCCGGACAACTCCTGAGCAAGGTTCTACTTTTCCTGAAATGACCCCAAGTCGGTGGATATATCTCATACACAAGTCAAAAACCACAGCTCCCTTCATTGTTTCTGATTGCAAAGCACACCTTGATTATGATATGTTTGCCATATTGTCTGGACCGACGGTTGCTGCCATTTCTGTGGTATTTGACAATGCTGAAACTGAAGAGGTGTACCAAACATGTATGGATGGATTCTTAGCTGTTGCAAAGGTAGCAGCTTATTATCATCTGGACAGTATACTAGATGATTTGGTTGTGTCGCTTTGTAAGTTTGTTACTATTTTGGATCCGTTATCTCCCGAGGAGTCAATCTTAGCCTTTGGAGAGGACACAAAAGCAAGAATGGCAACTGAGACTGTTTTCACTATTGCGAATCGGTATGGGGATTACATCCGAACAGGATGGAGGGATATTCTCGATTGTATCTTAAAATTTCACAAGTTAGGTCTTCTTCCTGCTCAAATGGCCAATGATGCGGCCGAAGAGTCAGAGCCTTCCACAGAAACCGGGAATGGGAAGCGTTATGCTAATTCTGTATCTTCATCTCAGCTTTTATCTGTTAATACTCCAAAGAGATCCTCAGGATTGATCAGCCGGTTTAGTCAACTCTTATATCTTGGTGCCGAAGAGACAAAATCAGTACCAACTGAAGAACAACTTGCTGCTCAGCAGAGTTCTCTTCAAACAATTCAAAAGTGTCACATTGAGAGCATATTTACTGAGAGTAAGTTTTTGCAAGCTGAATCTCTATTGCACCTTGCTAAAGCACTCAAAAGCGCAGGAGTGAAGCCTAAGAAAGGATCTGAGGATGAAGATACTTCAGTTTTCTGCCTGGAGTTGCTGGTAGCAATCACTCTGAATAACAGAGATAGAATTGAACTTCTCTGGCCAGATGTTTATGAGCATATTTCCAATATTGTGCAATCAACTGTGATGCCTTGTGCACAGGTAGAGAAGGCTGTTTTTGGACTCTTAAGGATTTGCCATCGCTTACTTCCCTACAAAGAGAACATTACCGATGAACTTTTGAAGTCCCTTCAACTTGTCCTGAAGCTTGATGCAAGGGTTGCTGATACATACTATGAACAGATTACGCAGGAAGTTAGTAACCTTGTGAAGGCAAATGCTTCTCACATTAGATCTCAGTTAGGATGGCGGACGATAACATCACTGCTTTCCATCACTGCTAGACACTTGGAATCCTCCGAGTCTGGATTTGATGCATTGTTTTTCATTATGTCAGATGGAGCTCACATACTTCCAGCTAATTTTGTTCTCTGTGTAGATGCTGCAAAGCAATTTGCTGAGTCTCGTGTTGGACAGGTCGAGCGGTCTGTAGTGGCACTTGATCTATTGGCAGGGTCTGTCAATTGTCTTGAGAAGTGGACTAATGATGCTAAGCAAGTAATGAAAGAAGATGAAGTGGCAAAGATGTTGCAGGATATTGGGGACATGTGGCTGAGGCTAGTACAGGGACTAAAAAAACTATGTTTGGACCAAAGAGAAGAGGTTCGAAACCATGCATTGTTATTGTTGCAGAATTGCTTAACAGGATCAGTTGGAATTCATATCCCACATGGCTTGTGGTTACAGTGTTTTGATCAAGTGATCTTCACCGTGCTTGATGATCTACTTGAAATTTCTCAGACACACTCTCCAAAGGACTACCGAAACATGGAAGGAACACTTGTTCTTGCCGTGAAGCTCTTGTCCAAAGTTTTCCTCTTGTTACTCCAAGACTTATCACAATCTACAGACTTCAGCAAATTATGGTTGGGTGTGTTAAATCGTTTTGAAATATTTATGAAGGTGAAAATTAGGGGAAGGAAAAGCGAGAAGTTTCAAGAGCTTGTACCTGAGCTTCTCAAGAACACTTTGCTTGTTATGAAAGCAGGCCGTGTACTAGAACGAAGCAGTAGTAGTGGAGATGAAAACAGTTTATGGGAACTGACATGGCTGCATATAAATAACATCGCCCCATCATTACAATCTGAAATTTTCCCTGAGCAAGATTCTAAGCAATTGGAGCAGAAACAGACTGAACAAGTTGGAGATAGAGGGCCTGCTGAGAATGTTTCCGTGCCTTCAAATGAAACAGCAGGCGAAGATGGTTAA	4395	0.4059	MGNVKLQMQTGINAMEEEAGQSGAGYPSRTTVACMINAEIGAVLAVMRRNVRWGVHYMSDDDQLEHSLVQSLKALRRQIFSWHSQWHVINPVLYLQPFLDVIQSDETGAPITGVALSSVYKILTLDVIDQNTVNIGDAMHLVVDAVTSCRFEVTDPGSEEVVLMKILQVLLACVKSKASVMLSNQHICTIVNTCFRIVHQAGTKSELLQRIARYTMHELVRSIFCHLQDIDVTDQSLVNGSTALKEEIDGQKNEHNSANSQLENGSLISASDSQSVSTGIASSTLTDVAAITVDVTTAASSGKETDPNEQLMNEPYGIPCMVEIFHFMCSLLNVVEHMGMSPRLNTIAFDEDVPLFALTLINSAIELGGSSFHRHPRLLSLIQDELFGNLMQFGLSMSPLVLSMVSSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSKYGASYQQQEVAMEALVDFCRQKAFVVEMYANFDCDITCSNIFEDIVNLLSKSAFPVNSPLSTMNILALDGLIAVIQGMAERIGNGSLNSEHSIVNLEEYTPFWLEKCENFTDPNNWVPFVGRRKQFKKRLMIGADHFNRDTKKGLQFLQGTHLLPEKLDPQSVAFFFRYTTGLDKNLIGDYLGNHDEFCVDVLHEFARTFDFKDMALDTALRIFLETFRLPGESQKIQRVLEAFSERYYEQSPHILANKDAALLLSYSIIMLNTDQHNSQVKKKMTEEDFVRNNRRINGGNDLPREVLSGLYNSICKNEIRTTPEQGSTFPEMTPSRWIYLIHKSKTTAPFIVSDCKAHLDYDMFAILSGPTVAAISVVFDNAETEEVYQTCMDGFLAVAKVAAYYHLDSILDDLVVSLCKFVTILDPLSPEESILAFGEDTKARMATETVFTIANRYGDYIRTGWRDILDCILKFHKLGLLPAQMANDAAEESEPSTETGNGKRYANSVSSSQLLSVNTPKRSSGLISRFSQLLYLGAEETKSVPTEEQLAAQQSSLQTIQKCHIESIFTESKFLQAESLLHLAKALKSAGVKPKKGSEDEDTSVFCLELLVAITLNNRDRIELLWPDVYEHISNIVQSTVMPCAQVEKAVFGLLRICHRLLPYKENITDELLKSLQLVLKLDARVADTYYEQITQEVSNLVKANASHIRSQLGWRTITSLLSITARHLESSESGFDALFFIMSDGAHILPANFVLCVDAAKQFAESRVGQVERSVVALDLLAGSVNCLEKWTNDAKQVMKEDEVAKMLQDIGDMWLRLVQGLKKLCLDQREEVRNHALLLLQNCLTGSVGIHIPHGLWLQCFDQVIFTVLDDLLEISQTHSPKDYRNMEGTLVLAVKLLSKVFLLLLQDLSQSTDFSKLWLGVLNRFEIFMKVKIRGRKSEKFQELVPELLKNTLLVMKAGRVLERSSSSGDENSLWELTWLHINNIAPSLQSEIFPEQDSKQLEQKQTEQVGDRGPAENVSVPSNETAGEDG	1464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g04231	1464	CDD	Sec7	566	749	IPR000904	GO:0005085\|GO:0032012
	Trre9g04231	1464	Pfam	Guanine nucleotide exchange factor in Golgi transport N-terminal	319	480	IPR032691	-
	Trre9g04231	1464	Pfam	Sec7 domain	566	749	IPR000904	GO:0005085\|GO:0032012
	Trre9g04231	1464	Gene3D	-	642	760	IPR023394	-
	Trre9g04231	1464	FunFam	ARF guanine-nucleotide exchange factor GNOM	559	641	-	-
	Trre9g04231	1464	PANTHER	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	74	1432	-	-
	Trre9g04231	1464	FunFam	ARF guanine-nucleotide exchange factor GNOM-like	641	759	-	-
	Trre9g04231	1464	SMART	sec7_5	562	749	IPR000904	GO:0005085\|GO:0032012
	Trre9g04231	1464	MobiDBLite	consensus disorder prediction	1429	1464	-	-
	Trre9g04231	1464	Gene3D	-	559	641	-	-
	Trre9g04231	1464	ProSiteProfiles	SEC7 domain profile.	558	747	IPR000904	GO:0005085\|GO:0032012
	Trre9g04231	1464	SUPERFAMILY	ARM repeat	350	1338	IPR016024	-
	Trre9g04231	1464	SUPERFAMILY	Sec7 domain	562	757	IPR035999	GO:0005085\|GO:0032012
	Trre9g04231	1464	Coils	Coil	241	261	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g04231	Trre-Chr9	50086233	50093174	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g04231	K18443		-	gmx:100784083	2415.19

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre9g04231	9	50086233	50093174	Trre5g01927	5	14352743	14357720	PCT