Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01927 ATGATCAATGCAGAAATTGGCTCTGTTTTGGCAGTCATGCGAAGAAATGTTAGATGGGGAGTTCATTATATGTCAGATGATGACCAGTCAGAGCACTTCCTTGTTCAGTCTTTGAAGACACTAAGAAGACAAATTTTCTCATGGCAGAATCAATGGCATTCCATTAATCCTGCCTTGTATCTCCAACCTTTTCTTGATGTAATTCAATCAGATGAAACTGGCGCACCGATTACTGGTGTTGCTCTGTCATCAGTTTATAAGATCTTAACTCTGGACGTGATTGAGCAAAACACCGTCAATGTTATCGATACCATGGACTTGGTGGTTGATGCTGTCACAAGTTGCAGATTTGAGGTGACTGATCCTGGATCAGAAGAAGTTGTATTAATGAAGATTTTACAAGTTCTTCTTGCCTGTGTGAAAAGTAAAGCATCTGTAATACTTAGTAACCAACACATTTGCACTATTGTAAATACTTGCTTCCGTATAGTTCATCAAGCCGGAACCAAAGGGGAGCTGTTGCAGCGGATAGCTCGATACACAATGCATGAACTTGTTAGGTGTATATTCTCCCACCTTCAAGATATTGACATTGCAGAGACTCCAAAACATGAGACCCGTGAGCTAAATAATGAGCATGCTTCGGCAAGCAGACAATTTGAAAATGGGAGCCCGAACTCTGCATATGGTGGTCAACCATTGTCCATCAGCCTTGCTTCCAGTACTGCATATGTTGGTACAGTAACTGTATTGCCTGAAAACACAACTACTGCTAGCAGCGACAAGGAGAGTGATCTACGAGAATTGCAGCTCATGACTGAACCATATGGAGTTCCTTGTATGGTGGAGATATTTCACTTCTTGTGTTCTTTGTTGAATGTTGTTGAGCATATGGGAATGAATCCTAGATCAAACACACTAACATTTGATGAAGATGTGCCTCTTTTTGCCTTAAGTTTAATTAATTCAGCTATTGAGTTGGGAGGGCCTTCCTTTCGTCATCACCCCAGATTGCTGAATTTAATTCAAGATGAAGTATTTCATATTCTTATGCAATTCGGTTTGTCAATGAGTCCTCTTGTGCTTTCATTGGTGTGTAGCATTGTTCTCAATTTGTATCACCATCTTCGAACAGAACTCAAGTTACAGCTACAAGCATTTTTTTCATGTGTAATTTTGAGGCTTGCACAAAGCAAATATGGGGCTTCATATCAGCAACAGGAGGTTTTGATGGAGGCACTTGTTGATTTTTGCAGGCAACAAACATTCATGGTGGAGATGTTTGTTAACTTTGATTGTGACATTTCTTGCAATAATGTCTTTGAAGATATTGCTAATTTGTTGTCCAAAAGTGCTTTTCCGGTAAATAACCCATTATCTTCCATGCATATTCTTGCTTTGGATGGTCTTATTGCTCTAATGCAGGGAATGGCCAATAGGATAGGTAATGGATTTGTCAGTTCAGAACATTCTCCAGTGAATTTTGAAGAGTACATACCGTTCTGGCTGGAGAAGTGTGAAAATTTTGGTGACCCAAATGAATGGGTTCCTTTTGTCCGCCGAAGAAAGTACTTCAAGAGAAGATTGATGATCGGAGTGGATCACTTTAATCGTGATGCTAAGAAAGGCCTCAAGTTTCTCCAGGGAACGCATCTTTTGCCTGACAAACTTGATCCCCAAAGTGTTGCCTGCTTTTTCAGATTCACTGCTGGGTTGGATAAGAATGTCATTGGTGATTACTTAGGAAATCACGATGAATTCTGTGTTCAGGTTCTTCGTGAATTTTCTAGAACATTTGATTTCCAAGATATGACCTTAGACACAGCTCTGCGTATATTTTTGGAGACTTTTAGGCTGCCTGGAGAATCACAGAAGATACATAGGGTGCTTGAAGCTTTCTCTGAGAGATATTATGAGCAGTCACCACATATCCTAGTTAACAAGGATGCTGCTCTTGTGTTGTCATACTCAATTATAATGCTTAATACCGATCAGCACAATGTGCAGGTCAAAAAGAAGATGACAGAAGCAGATTTTATCAGGAATAATAGGCATATAAATGGCGGCAATGATCTACCTCGAGAATTCCTGTCAGAGATTTACCAATCAATTCGCAAGAATGAAATCCGCACAACCCCTGAATCAGGCTTTGGATCTCCTGGAATGACCCCAAGTCGGTGGATTTCTCTAATACACAAGTCAAAAGCAACCGCTCCATACATTGTATCTGATTCCAGACCATATCTGGATTATGATATGTTTGTTATATTGTCAGGCCCAACAATCGCTGCTGTTTCTGTGGTATTTGATAATGCTGAAAATGAAGAGGTATACCAAACATGTATAGATGGATTCTTAGCTATTGCAAAGATATCGGCTCACTATCATCTTGAAAATGTTCTAGATGATTTGATTGTGTGCCTCTGTAAGTTCTTCACCATCTTGGATCCATTATCAGTTGAGGAATCTGTCCTAGCCTTTGGAGATGACACAAAAGCACGAATGGTAACTGAGACAGTTTTCACTATTGCAAGTAGGTATGGTGATTACATCCGTACCGGGTGGAGGAATATTCTTGATTGCATCTTAAGATTGCACAAGTTAGGCCTTCTTCCTACTTATTTGGCCAGTGATGCAGTTGATGAGTCAGAGCCTTCCAAACTTAAATCAAATTCTTTATCATCAACTCGTCTTCAATCTATTAGTACTCCAAAGAGATCCTCAGGGTTATTGAGCAGGTTTAGTCAACTATTATCTCTTGCCACTGATGAGCCAAGAGCAATACCAACTGAAGAACAACTGGCCGCTCATCATCAAGCCGTACAAACAATTCAAAAGTGTCACATCGACAGCATATTCACTGAAAGTAAATTCTTGCAGGCTGAATCCCTATTGCAGCTGGTAAGATCACTCATCAATGCTGGAGCTCAATCTCAGAAGAAGAATAAAAAATCTCAGATTGATGATGCTTCGGTTTTCTGCCTGGAGTTACTGGTAGCAATCACTCTAAATAACAGGGATAGGATTGGGCTTATATGGAAGGGTGTTTATGAGCACATATCCAATATTGTTAAATCAACCGTGATGCCATGTGCACTGGTAGAAAAGGCTGTCTTAGGACTTCTAAGGATTTGTCATCGCTTACTTCCCTATAAAGAGAACATGGCTGATGAACTTTTGAAGTCCCTGCAACTTATCTTGAAGCTTGATGCACTGGTTGCAGATGCATACTATGAGCAGATAACATGGGAAGTCAGTCGCCTTGTTAAAGCAAACGCGTCTCATATCAGATCTCATTTAGGATGGCGGACAATTACGTCACTACTTTCTGTCACCGCTAGACACCTCGAAGCATCCGAGGTTGGATTTGATACACTGTCATTCATTATGTCTGATGGAACTCACTTGCTCCCTGCTAATTATATTCTCTGCGTAGATGCTGCGAGGCAGTTTGCTGAGTCTCGCGTAGGACTGGTGGGTCGGTCCATAGGTTCACTAGACCTTATGGCAGGTTCTTTCAACTGTTTAAAAAAATGGACTGGTGATGCAAAGCAAGCAACAAAAGAAGAGGAAGTGGAAAAGATGTTGCAGGATATTGGGGAAATGTGGTTGAGGCTAGTACAAGGACTAAGGAAAGTATGCTTGGACCAAAGAGAGGAGGTTAGAAATCACGCACTGTTATCTTTGCAGAAGTGCATGACAGAAGCTGTTGAAACTCGTCTCCCGTGTGATTTGTGGTTACAGTGTTTCGATCAAGTAATATTCACCTTGCTCGATGACCTGCTTGATATTGCCGAGGAACACTCTCAAAAGGACTACCGGAACATTGAAGAAACTCTTAGTCTTGCCTTAAAGCTCTTATTTAAAGTTTTTCTCCAATTACTACAAGAACTATCACATCTCGAAACCTTTTCTAAACTATGGGTAGGTGTGCTAAGCCATGCAGAAAATTACGTGAAGGCGAAAGTTAGAGGAAGGAAAACCGAGAAGCTTCAGTTCCTTGTTCCAGAGCTTCTGAAGAACACGTTGGTTGTTATGAAATCAAGGGGCATACTAGTGGAGAACAGTGATTTATGGGAACTGACATGGTTACATATGAAGAATATAGTTCCCTCATTGCAGTCTGAGGTTTTACAAGAGCAGTTGGATCAAAAGCAGATTGAAACAGTTGCAAAATTGGAACATGATGCAAACATTTCTGTTCCTTCAAATGAAACACTTGGTCAAGATGGTGCTGTTATTATTGGTTAA 4251 0.4053 MINAEIGSVLAVMRRNVRWGVHYMSDDDQSEHFLVQSLKTLRRQIFSWQNQWHSINPALYLQPFLDVIQSDETGAPITGVALSSVYKILTLDVIEQNTVNVIDTMDLVVDAVTSCRFEVTDPGSEEVVLMKILQVLLACVKSKASVILSNQHICTIVNTCFRIVHQAGTKGELLQRIARYTMHELVRCIFSHLQDIDIAETPKHETRELNNEHASASRQFENGSPNSAYGGQPLSISLASSTAYVGTVTVLPENTTTASSDKESDLRELQLMTEPYGVPCMVEIFHFLCSLLNVVEHMGMNPRSNTLTFDEDVPLFALSLINSAIELGGPSFRHHPRLLNLIQDEVFHILMQFGLSMSPLVLSLVCSIVLNLYHHLRTELKLQLQAFFSCVILRLAQSKYGASYQQQEVLMEALVDFCRQQTFMVEMFVNFDCDISCNNVFEDIANLLSKSAFPVNNPLSSMHILALDGLIALMQGMANRIGNGFVSSEHSPVNFEEYIPFWLEKCENFGDPNEWVPFVRRRKYFKRRLMIGVDHFNRDAKKGLKFLQGTHLLPDKLDPQSVACFFRFTAGLDKNVIGDYLGNHDEFCVQVLREFSRTFDFQDMTLDTALRIFLETFRLPGESQKIHRVLEAFSERYYEQSPHILVNKDAALVLSYSIIMLNTDQHNVQVKKKMTEADFIRNNRHINGGNDLPREFLSEIYQSIRKNEIRTTPESGFGSPGMTPSRWISLIHKSKATAPYIVSDSRPYLDYDMFVILSGPTIAAVSVVFDNAENEEVYQTCIDGFLAIAKISAHYHLENVLDDLIVCLCKFFTILDPLSVEESVLAFGDDTKARMVTETVFTIASRYGDYIRTGWRNILDCILRLHKLGLLPTYLASDAVDESEPSKLKSNSLSSTRLQSISTPKRSSGLLSRFSQLLSLATDEPRAIPTEEQLAAHHQAVQTIQKCHIDSIFTESKFLQAESLLQLVRSLINAGAQSQKKNKKSQIDDASVFCLELLVAITLNNRDRIGLIWKGVYEHISNIVKSTVMPCALVEKAVLGLLRICHRLLPYKENMADELLKSLQLILKLDALVADAYYEQITWEVSRLVKANASHIRSHLGWRTITSLLSVTARHLEASEVGFDTLSFIMSDGTHLLPANYILCVDAARQFAESRVGLVGRSIGSLDLMAGSFNCLKKWTGDAKQATKEEEVEKMLQDIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQKCMTEAVETRLPCDLWLQCFDQVIFTLLDDLLDIAEEHSQKDYRNIEETLSLALKLLFKVFLQLLQELSHLETFSKLWVGVLSHAENYVKAKVRGRKTEKLQFLVPELLKNTLVVMKSRGILVENSDLWELTWLHMKNIVPSLQSEVLQEQLDQKQIETVAKLEHDANISVPSNETLGQDGAVIIG 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01927 1416 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 41 1381 - -
Trre5g01927 1416 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 279 440 IPR032691 -
Trre5g01927 1416 ProSiteProfiles SEC7 domain profile. 518 707 IPR000904 GO:0005085|GO:0032012
Trre5g01927 1416 SMART sec7_5 522 709 IPR000904 GO:0005085|GO:0032012
Trre5g01927 1416 FunFam ARF guanine-nucleotide exchange factor GNOM-like 601 719 - -
Trre5g01927 1416 Pfam Sec7 domain 526 709 IPR000904 GO:0005085|GO:0032012
Trre5g01927 1416 Gene3D - 602 717 IPR023394 -
Trre5g01927 1416 SUPERFAMILY Sec7 domain 523 710 IPR035999 GO:0005085|GO:0032012
Trre5g01927 1416 FunFam ARF guanine-nucleotide exchange factor GNOM 519 601 - -
Trre5g01927 1416 MobiDBLite consensus disorder prediction 205 224 - -
Trre5g01927 1416 CDD Sec7 526 709 IPR000904 GO:0005085|GO:0032012
Trre5g01927 1416 Gene3D - 519 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01927 Trre-Chr5 14352743 14357720 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01927 K18443 - gmx:100802024 2246.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04231 9 50086233 50093174 Trre5g01927 5 14352743 14357720 PCT