Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04211 ATGGCTCACAGCTATACCAAGGATACCGGTATAGAGGTATCCCACTTGAGTTGGTGGTATGTCGTTTCATCTTACGAAGAACTCAAATCGGGGAAACACAAGGTGAAAACCTCAGCCGATACTTTTAGTTGTCCGTACTGCCCCGAGAAGAAGCATGATTATAAGTACAATGAACTCCTTAATCATGCCACCGGAATCGGTAGGAGTAGTTCGGATAAGAGAAGTGCTAAAGAGAAGGGTAGTCATCTGGCTTTGGTAAATTATTTGGAACAAGATCTTAGGAGCAAGGACGGTGCATCGAAACCTGTAGATCAAGTTACAAGCACAATAACTCCAGGACAAACTGTAATGTCTCACTGTGCTTTCAAGGATACCGATATAAGTTGGTGGTATGTAGATACAGCTTATGAAGAGCTAACAAATGGAACTCGCAATGTGAGAACACCAAACGACGCTTTCATCTGTCCATACTGCCCAAACAGAAAACAAGATTATGCATACAGGGAACTCCTAGAACATGCTTTTATGGTCGGTCGGAGTAGTTCAGATAAGAGAAGTGCTAGAGAGAGGGCTAATCATCTCGCTTTGTTGAAATATTTGGAAAAGGATGTTACGAGTACGCCTGGACCGTCAAAACCTGTCGATAAAGGTACAAAATTGATAAGCTTAGGGCCGGCTGTCGTGGCTCAATGCTCTAACAACAATACTGATTCAAGCGAATCTCGAATAAGTTGGTTGTATATAGATAGATTTTATAAAGAGCTCAAGAATGGAAGTCTCAAAGTGAGAATTTCAGATGATACTTTCACTTGTCCATACTGTCCGAAAATGAGAAAACCGGAGTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTCGGTCAGAGTCCTTCGCAAAAGAGAAGTCATAGAGAGAAAGCAACTCATCTTGCTTTAATGAAATATCTCAAAGAGGATATTATTATAAATGTGACGGCTCCATCAAAACCTGTGGATGAAGGTAGCGTAATACAAAGACGAGAAGAAAATGTGGCCACTGGCAGCGCTGACAAAGATTCTGATAAAAGTTCATCTCAAATAGATATGTTGCAAGTAAAAAAAGCATATGAACAACTCAAAAGGGGGAGTCAAACAGTGCAAACCTCAGCCGAGACTTTCATTTGTCCATACTGCCCTAATAGAAAGAGGAAACGGGATTACGTGTACAGGGAAATCATTGAACATGCTTCTGGGGTGGGTTGGAGTATCTCACAAACTAGAAGTGGCATTGAAAAGGCGAATCATCTGGCTTTGGTCAAATATTTGAAAAGGGATCTTATAAATCTCGGCGGTCCTTCAGAATCTACGAATGGAGGCACCATAGTGTCGAATCGAGGAGGAACTGTACAAGGTCACCGCTCCGAGAAGGATACTAATAAAAGGGCATCTCAAATAGATGTGTTGTTTGTAAAGAAATCCTACGAAGAACTCAAAAGGGGAACTCGCAAGGTCAAAACATCAGCAGACACTTTCTCATGTCCGTATTGCCCTAATAGAAAATACAATTATAGGTACAGCGAACTCCTTAATCATGCTTTAGGGGTCGGTCAGAGTGACTCGGAAAAGAGAAGTGTATTGGAAAAGGCCAATCATTTAGCTTTAGTGAGATATTTGGAAAAGGATCTTATGATTATCAATGTGGAACATCCAAAACCTGTAAATAGATATTTGGATAATAATCGTATGAATGTGGAACAACATCCAACGAAACCGTTAAATGAAGGCATTCTTATCAATTCCGAAAAGCATTTCGTGTGGCCATGGACTGGGATTGTGATTAACATTCCTACGATACAGACAGAAGATGGACGATGTATTGGTGAAAGTGGTTCCAAGCTAAGGGATGAATACCGAAGCAAGGGTTTTAATCCACGTAGAGTCCGTACACTTTGGAATAACTGGGGTCACACTGGAGCCGCAGTTGTGGAATTCGATAAAAGTTGGTTAGGGTTATATAACGCAGTTGCATTTGAGAGGGCGTATGAATTAGATCATCACGGGAAAAAGGACTGGCTTTCTTTTACCGAACAAAAGTCCGGTCTTTATGCGTGGATTGCTCGAGCTGATGACTACTATATGTACAACGTAATCGGGGAACAACTACAGAAAATGGGGGATGTTAAAACAATATCTGAAATCATCGAATCAGAAGCTAGAAGGTTCAATATGCTTGTTCAGAATATGCATAACAATCTTCTGGTAAAGAATAACAAGATAAAAGAAATGGAAGTAGTATGCAATGAAATTACACTTCGCATGGACATTGTGATGCGCGAAATGGACAGTCTCACTCTATCACACAGTCAAGAGTTGAAGAAAATACAGTCAAGTGCAACTCAACACTTTCAGAGTATTTTGAATGGCCATGAAAGGCTCAAGTTGCAACTGGAATCTCAGAAAAAACAGCTTGAGTTGCGAAGAATTGAACTGGAAAAACGTGAGGCGCATAATGAAAGTGAAAGAAAAAAGTTGGAAGAAGAGATGAACAAGACTGCAAAGAAAGACCACTTTCTTCAAATGGCTGCTCTGGAGCAACAGAAAGCCGGCGAAAATGTTTTGAAACTTGCTGCAGATCAAAAGAGGCAAAAAGAACAATTCCATGCTAAAATCATCCAGCTCGAGAAACAACTAAATGTGAAACAAAAGCTGGAATTGGAGATTCAGCAATTAAAAGGAAAATTAAATGTCATGAAGCACATGGAAGACGAAGGAGATTTCGATGTTCTGGATATGATGGATGCTTTACATTTGGATTTAAGAGAGAAAGAACAGTCACTTCGAGACATGGACGCGTTGAACCAAACGCTGATCATTAAAGAGCGTAAGAGCAACGATGAACTGCAGGAAGCTCGAAAGGAATTGATTTCATGCATTAAAGAGATACCTAGCCGTGCTGAAATTGGTGTGAAGAGAATGGGGGAGCTAGATATTAGACCGTTCCTAGAAGCTATGAAGAAAAAATATAATGCGGATGACGCAGAAGACCGAGCTTCAGAATTGTGTTCGTTATGGGAAGAGTATCTGAAGGACCCTGACTGGCATCCATTTAAAATTGCTACGGTTCAAGGGAGACATCAGGAAGATATAGATGATGAAGATGAAAAGCTGAAAGGACTGAAAAACGAGATGGGCGAAGAAGTCTACAAAGTTGTGAGACAAGAGGGGAATGTTATGAAACCTGGAATTAGTGAGCGCGTTGTTTTCTTGAAGGAAATTTTGCAGTTGAACATATTTAGGAATCGGAAGATATATTGGCTTCACTTGACATTTCATGCTTCTGTGGAGTAG 3330 0.406 MAHSYTKDTGIEVSHLSWWYVVSSYEELKSGKHKVKTSADTFSCPYCPEKKHDYKYNELLNHATGIGRSSSDKRSAKEKGSHLALVNYLEQDLRSKDGASKPVDQVTSTITPGQTVMSHCAFKDTDISWWYVDTAYEELTNGTRNVRTPNDAFICPYCPNRKQDYAYRELLEHAFMVGRSSSDKRSARERANHLALLKYLEKDVTSTPGPSKPVDKGTKLISLGPAVVAQCSNNNTDSSESRISWLYIDRFYKELKNGSLKVRISDDTFTCPYCPKMRKPEYVYREILEHASGVGQSPSQKRSHREKATHLALMKYLKEDIIINVTAPSKPVDEGSVIQRREENVATGSADKDSDKSSSQIDMLQVKKAYEQLKRGSQTVQTSAETFICPYCPNRKRKRDYVYREIIEHASGVGWSISQTRSGIEKANHLALVKYLKRDLINLGGPSESTNGGTIVSNRGGTVQGHRSEKDTNKRASQIDVLFVKKSYEELKRGTRKVKTSADTFSCPYCPNRKYNYRYSELLNHALGVGQSDSEKRSVLEKANHLALVRYLEKDLMIINVEHPKPVNRYLDNNRMNVEQHPTKPLNEGILINSEKHFVWPWTGIVINIPTIQTEDGRCIGESGSKLRDEYRSKGFNPRRVRTLWNNWGHTGAAVVEFDKSWLGLYNAVAFERAYELDHHGKKDWLSFTEQKSGLYAWIARADDYYMYNVIGEQLQKMGDVKTISEIIESEARRFNMLVQNMHNNLLVKNNKIKEMEVVCNEITLRMDIVMREMDSLTLSHSQELKKIQSSATQHFQSILNGHERLKLQLESQKKQLELRRIELEKREAHNESERKKLEEEMNKTAKKDHFLQMAALEQQKAGENVLKLAADQKRQKEQFHAKIIQLEKQLNVKQKLELEIQQLKGKLNVMKHMEDEGDFDVLDMMDALHLDLREKEQSLRDMDALNQTLIIKERKSNDELQEARKELISCIKEIPSRAEIGVKRMGELDIRPFLEAMKKKYNADDAEDRASELCSLWEEYLKDPDWHPFKIATVQGRHQEDIDDEDEKLKGLKNEMGEEVYKVVRQEGNVMKPGISERVVFLKEILQLNIFRNRKIYWLHLTFHASVE 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04211 1109 MobiDBLite consensus disorder prediction 451 472 - -
Trre9g04211 1109 Gene3D XS domain 592 761 IPR038588 -
Trre9g04211 1109 PANTHER RIBONUCLEASE P SUBUNIT P38 123 216 IPR045177 GO:0080188
Trre9g04211 1109 Pfam XS domain 595 706 IPR005380 GO:0031047
Trre9g04211 1109 Pfam XH domain 984 1067 IPR005379 -
Trre9g04211 1109 Coils Coil 947 967 - -
Trre9g04211 1109 Pfam XS zinc finger domain 507 549 IPR005381 GO:0031047
Trre9g04211 1109 Pfam XS zinc finger domain 271 313 IPR005381 GO:0031047
Trre9g04211 1109 Pfam XS zinc finger domain 155 196 IPR005381 GO:0031047
Trre9g04211 1109 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
Trre9g04211 1109 Pfam XS zinc finger domain 389 433 IPR005381 GO:0031047
Trre9g04211 1109 Coils Coil 1036 1056 - -
Trre9g04211 1109 Coils Coil 870 914 - -
Trre9g04211 1109 Coils Coil 800 848 - -
Trre9g04211 1109 MobiDBLite consensus disorder prediction 342 361 - -
Trre9g04211 1109 MobiDBLite consensus disorder prediction 342 358 - -
Trre9g04211 1109 CDD RRM_like_XS 598 705 IPR005380 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04211 Trre-Chr9 49857621 49863528 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04211 - - lja:Lj0g3v0013419.1 1377.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04211 9 49857621 49863528 Trre9g04211 9 49857621 49863528 ECH
Trre5g01883 5 13989685 13991669 Trre9g04211 9 49857621 49863528 PCT