Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03084 ATGAGTGTAGATCTGAAGAAAACTGCCTCTAATGGCCATGAAAAAATGTTAATACCACAAGAACAGCAGGGAAAGATCAATGAGGTGAGAAGGTTAATCGGGCCACTGTCTGGTAAGGCATCGGTTTATTGTTCTGACGCATCCATCTCAAGGTATTTAAGGGCACGAAATTGGAATGTCAAGAAGGCGGCTAAAATGTTGAAGCAGACCCTTAAATGGAGAGAAGAATATAAACCAGAAGAGATCCGCTGGGAAGATATTGCTCAAGAAGCAGAGACCGGAAAGATCTACAGATCAAATTATATTGACAAGCATGGGAGAACAGTACTTGTAATGAGACCTGCTCGTCAGAACTCAAAGTCAACAAAAGGACAAATTAAGTATTTGGTGTACTGCATGGAGAATGCTATTCTAAATCTTTCACCAGAACAGGAACAGATGGTCTGGCTGATTGATTTCCAGGGTTTCAATATGTCACACATATCTATCAAAGTGACACGCGAAACTGCCCATGTATTACAAGACCATTATCCTGAACGGCTGGGTCTGGCAATACTGTACAATCCACCTAAAATCTTCGAACCATTCTTCACGATGGTAAAGCCGATATTAGAGACCAAGACTTATAACAAAGTGAAGTTCGGTTATTCTGATGATCAGAATACCAAGAAGATTATGGAGGATTTGTTTGATTTGGAGCAGCTTGAATCTGCATTCGGCGGGAATGATAATACACCATTTGACATAAATAAATATGCTGATAGAATGAAAGAAGATGATAAGAAGATTCCATCTTTCTGGACAAGGGAAATCTCTCCATCTTCGGTCCCAATTGATGTTGTTCCTTCTTTAGATTCGATTAAATTAGACACAGATTCTGATGCCTCTGACAATGAGAAGATAGTTTCTTCTTCTGACTCAGTGACGGATACTGGCTTCGTCGACCCTGATCAAAACTCGGTTATTCAAGAGGATCGGAATGCAAGTGCTGGCGCTGCTATGCATTAG 1008 0.4058 MSVDLKKTASNGHEKMLIPQEQQGKINEVRRLIGPLSGKASVYCSDASISRYLRARNWNVKKAAKMLKQTLKWREEYKPEEIRWEDIAQEAETGKIYRSNYIDKHGRTVLVMRPARQNSKSTKGQIKYLVYCMENAILNLSPEQEQMVWLIDFQGFNMSHISIKVTRETAHVLQDHYPERLGLAILYNPPKIFEPFFTMVKPILETKTYNKVKFGYSDDQNTKKIMEDLFDLEQLESAFGGNDNTPFDINKYADRMKEDDKKIPSFWTREISPSSVPIDVVPSLDSIKLDTDSDASDNEKIVSSSDSVTDTGFVDPDQNSVIQEDRNASAGAAMH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03084 335 SUPERFAMILY CRAL/TRIO N-terminal domain 19 86 IPR036273 -
Trre9g03084 335 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Trre9g03084 335 SUPERFAMILY CRAL/TRIO domain 84 262 IPR036865 -
Trre9g03084 335 MobiDBLite consensus disorder prediction 291 335 - -
Trre9g03084 335 Pfam CRAL/TRIO domain 93 241 IPR001251 -
Trre9g03084 335 SMART sec14_4 90 244 IPR001251 -
Trre9g03084 335 FunFam Phosphatidylinositol transfer protein 3 5 276 - -
Trre9g03084 335 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Trre9g03084 335 Gene3D - 3 271 IPR036865 -
Trre9g03084 335 MobiDBLite consensus disorder prediction 300 326 - -
Trre9g03084 335 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
Trre9g03084 335 PRINTS Cellular retinaldehyde-binding protein signature 48 70 - -
Trre9g03084 335 PRINTS Cellular retinaldehyde-binding protein signature 164 185 - -
Trre9g03084 335 PRINTS Cellular retinaldehyde-binding protein signature 197 216 - -
Trre9g03084 335 PANTHER GH16843P 8 272 - -
Trre9g03084 335 CDD SEC14 92 242 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03084 Trre-Chr9 39274887 39277214 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03084 K26544 - gmx:100777106 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03084 9 39274887 39277214 Trre9g03084 9 39274887 39277214 ECH
Trre9g03084 9 39274887 39277214 Trre5g02301 5 17442263 17444352 PCT