Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03083 ATGGGCCACTTATCCATCACCACCACTTTCATCTCTTTTCTTTTTCTCTTCCTAACTCGCCACTACCAACTCGTTCATGCCGAGTCACCAACTCAGCCTCCTTATTCCTGCGACATCACCAACCCACATACAAAATCCTATGCTTTCTGCAATCTCAACCTTCCCATCACTCAAAGAGCCAAAGATATAGTGTCACGGCTCACATTGGATGAAAAACTCTCTCAACTCGTTAACACAGCACCAGCGATTCCTCGACTCGGTATACCGAGTTACCAATGGTGGAGTGAAGCTTTGCATGGTGTTGCTGATGCTGGTAAAGGGATAAGATTGTATGGTGGTAGTATTAAAGGTGCTACTAGTTTCCCTCAAGTTATTCTTACTTCTGCTTCTTTTGATTCCAAACTTTGGTATCAAATTAGTCAGGTGATTGGAACGGAAGCTAGAGGAATCTACAATGCTGGACAAGCAACAGGGATGACATTTTGGGCACCAAACATAAACATATTTAGGGACCCAAGATGGGGAAGAGGACAAGAAACAGCTGGGGAAGATCCTTTGGTTAATGCAAAGTATGCAGTTTCATATGTGAGAGGACTTCAAGGTGATTCTTTTGAAGGTGGTAAACTTATTGGAGATCGTCTTAAAGCTTCTGCTTGTTGCAAACATTTTACTGCCTATGATTTGGATGATTGGAAGGGTATAGATCGTTTTTCTTTTGATGCCAAAGTAACTTTACAAGATTTGGCTGATACATATCAACCCCCATTTCATAGTTGCGTACAACAAGGACGATCTAGTGGAATAATGTGTGCTTACAACAGTGTCAATGGTGTTCCAAATTGTGCAGATTATGAGCTGTTAACCAATACTGCAAGAAAAAAATGGAATTTCAATGGGTATATTACGTCGGATTGTGGAGCAGTAGATATCATAAAAACAAGACATGGTTACGCAAAAACACCAGAGGATGCCATAGCCGATGTACTTCAAGCTGGAATGGATGTGGAATGTGGCGATTACTTCACTAACCATTCAAAATCAGCAGTGTTACAGAAAAAAGTACCTATATCTCATATCGACCGTGCTCTACAAAATCTATTCTCCATTAGAATAAGATTAGGCTTATTTGATGGAAATCCAACAAAACTCAAATATGGATCAATTGGTCCAAATCAAGTATGCTCTAAACAAAACCTAAACCTAGCTCTAGAAGCTGCAAGAAGTGGCATTGTTCTTTTAAAAAACAATGCTAAAACTCTCCCACTTCCGAAATCAACAAATTCCATTGCAATTATAGGCCCTAATGCAAACTCATCATCACAAGTTGTTTTAGGAAACTATTTCGGCCGTCCTTGTAATTTGGTAACAATAAAACAAGGCTTTGAGAGGTATGCTAAGAACATTGTTTATCATTATGGATGTAGTGATGGAACAAAGTGTCTTAATGCTGAAATTGAGCAAGCAGTTGAAGTTGCTAAAAAAGTTGATTATGTTGTTTTGGTTATGGGATTGGATCAAAGCCAAGAGAGGGAATCACATGATAGAGATGATTTAGAGTTGCCAGGTAAACAAAAGGAACTCATTGAAAGTGTTGCTAAAGCTTCTAAAAGGCCTGTTATTTTGGTGCTTTTGTGTGGTGGCCCTGTTGATATAAGTTTTGCTAAGTTTGATCACAAAATTGGAGGGATTTTGTGGGCTGGTTATCCTGGTGAACTTGGTGGATTGGCTTTGGCTCAGATTGTGTTTGGTGATTACAATCCAGGAGGAAGACTACCAGTGACTTGGTACCCAAAAGATTACATCAAAATACCAATGACAGACATGAGAATGAGACCCGATCCATCCTCCGGCTATCCCGGTAGAACATACCGCTTCTACACCGGTCCAAAGGTCTATGAATTTGGCTATGGTCTAAGCTACTCAAAATATTCATACAACTTCATTTATGCCAAAAATAACAACCTTCATATCAACCAATCATCCACTCATTCAATACTCGAAAACTCCGAAACAATCCGTTACAAACTTGTTTCGGAGTTAGGCGAAGAAACATGTAAAGCCATATCTGTTTCTGTCAAATTGGGAGTTACAAACAATGGAAACATGGTTGGGAAACATCCTGTTTTGCTGTTTGTGAAGCACAAGAACGGTAGAAATGGAAATCCAGTGAAACAGTTGGTGGGTTTTGAGAGTGTGACTGTGGAAGCAGGTAAAAGGGGTGAAGTTGGATTTGAAGTAAATGTTTGTGACCATCTTAGTAGAGCAAATGAGAGTGGTGTTAAGGTGATTGAAGAAGGTGATTATTTATTGAGTGTGGGAGAGGAAGAGTATTCAATAAATGTCACTCTTTGA 2352 0.3954 MGHLSITTTFISFLFLFLTRHYQLVHAESPTQPPYSCDITNPHTKSYAFCNLNLPITQRAKDIVSRLTLDEKLSQLVNTAPAIPRLGIPSYQWWSEALHGVADAGKGIRLYGGSIKGATSFPQVILTSASFDSKLWYQISQVIGTEARGIYNAGQATGMTFWAPNINIFRDPRWGRGQETAGEDPLVNAKYAVSYVRGLQGDSFEGGKLIGDRLKASACCKHFTAYDLDDWKGIDRFSFDAKVTLQDLADTYQPPFHSCVQQGRSSGIMCAYNSVNGVPNCADYELLTNTARKKWNFNGYITSDCGAVDIIKTRHGYAKTPEDAIADVLQAGMDVECGDYFTNHSKSAVLQKKVPISHIDRALQNLFSIRIRLGLFDGNPTKLKYGSIGPNQVCSKQNLNLALEAARSGIVLLKNNAKTLPLPKSTNSIAIIGPNANSSSQVVLGNYFGRPCNLVTIKQGFERYAKNIVYHYGCSDGTKCLNAEIEQAVEVAKKVDYVVLVMGLDQSQERESHDRDDLELPGKQKELIESVAKASKRPVILVLLCGGPVDISFAKFDHKIGGILWAGYPGELGGLALAQIVFGDYNPGGRLPVTWYPKDYIKIPMTDMRMRPDPSSGYPGRTYRFYTGPKVYEFGYGLSYSKYSYNFIYAKNNNLHINQSSTHSILENSETIRYKLVSELGEETCKAISVSVKLGVTNNGNMVGKHPVLLFVKHKNGRNGNPVKQLVGFESVTVEAGKRGEVGFEVNVCDHLSRANESGVKVIEEGDYLLSVGEEEYSINVTL 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03083 783 SUPERFAMILY (Trans)glycosidases 47 408 IPR017853 -
Trre9g03083 783 PANTHER SUGAR HYDROLASE-RELATED 32 779 IPR044993 GO:0009044|GO:0045493
Trre9g03083 783 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 410 643 IPR036881 GO:0004553|GO:0005975
Trre9g03083 783 Gene3D - 396 641 IPR036881 GO:0004553|GO:0005975
Trre9g03083 783 FunFam probable beta-D-xylosidase 2 395 641 - -
Trre9g03083 783 Pfam Glycosyl hydrolase family 3 N terminal domain 113 366 IPR001764 GO:0004553|GO:0005975
Trre9g03083 783 FunFam probable beta-D-xylosidase 7 59 382 - -
Trre9g03083 783 SMART Fn3_like_2 706 776 IPR026891 -
Trre9g03083 783 Pfam Glycosyl hydrolase family 3 C-terminal domain 410 640 IPR002772 GO:0004553|GO:0005975
Trre9g03083 783 Gene3D Immunoglobulins 670 782 IPR013783 -
Trre9g03083 783 Gene3D - 59 385 IPR036962 GO:0004553|GO:0005975
Trre9g03083 783 Pfam Fibronectin type III-like domain 708 774 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03083 Trre-Chr9 39244455 39263981 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03083 24 783 Glycoside Hydrolase AT1G78060 63.303 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03083 - - gmx:100780688 1206.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03083 9 39244455 39263981 Trre9g03083 9 39244455 39263981 ECH
Trre9g03083 9 39244455 39263981 Trre5g02302 5 17452294 17457991 PCT